Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3287 ATGGCAGGAACCATGAAAGCATTCTTGCTCATGTTTGTGGTGCAAGCCGCTTTTGCCGGAAACAACATTTTGTATAAGATTGTTATCTTTGACGGAATGCCGGTCAGCATCATCACTGTTTACCGTCAAATCATTTCAGCCGCCTTCACTCTATCCTTAGCTTTCATCTTTGAACGCAATAACATGCCCAACCTCACTTTCAAGCTCCTCTCCATCTCCTTCTTGAATGGATTACTTGGGGGAAGTCTGTACCAAAATTTATATTTTGAATCATTAAGCTTAATATCAGCCACCTTCGTCACGGCTCTGTTCAACCTTATTCCGGCCATTACTTTTGCTTTGGCCATCTTATTCGGTTTGGAAACTCTAGATTTTCATGCGATTGCTTGCAAAGTTAAGGTGATGGGTACAGTTATTGGAATTGGAGGGGCTATGTTTGTGACATTTCTCAAAAGTGTAGAACTGAGCATCTGGCCCTTCCACTTCAACATATTGAACAAGAAGGAAATAGAAACTCATTCGGGGAGTAAAGTGCTTGGAATCTGCTTTGGTTTTGTGAGCTGTATTCTGTTTTCATTTTGGCTCATCTTTCAGGGTAAGATGAGCAAGAGCAAAACATATCCACAACATTACACAAGCATGGCTTTAATGTCCATGATGGCAGCTTTACAAGCAACTGCTTATGCACTTTGTGTCGAAAGGGATTGGAGCCAATGGAGGCTTGGTTGGGATTTGAGGCTTCTTACTGTAGTATTTTCAGGAACTATGGGTACAGGATTTGCTAATGTTGTAATTGCTTGGTCTGTGAGGAAGAAAGGTCCACTCTTTGCTGCCCTTTTTAGTCCCGTTGAGCTTATACTTGTAGTCATTGCTGGCTCAATTATGTTGGATGAACCCTTGTACTTAGGAAGCCTAATTGGAGGGGTGCTGATAGTGGTTGGCCTTTACATGGTTCTTTGGGGTCAGAACAAAGAACTCCAAATGACCACTCAGTTGGAAGCCGAACACATTGAGGGTGCAAACACCATGGGAACCTGGAGAGCCCTAGAGGGAGATGCCAGATAG 1065 0.43 MAGTMKAFLLMFVVQAAFAGNNILYKIVIFDGMPVSIITVYRQIISAAFTLSLAFIFERNNMPNLTFKLLSISFLNGLLGGSLYQNLYFESLSLISATFVTALFNLIPAITFALAILFGLETLDFHAIACKVKVMGTVIGIGGAMFVTFLKSVELSIWPFHFNILNKKEIETHSGSKVLGICFGFVSCILFSFWLIFQGKMSKSKTYPQHYTSMALMSMMAALQATAYALCVERDWSQWRLGWDLRLLTVVFSGTMGTGFANVVIAWSVRKKGPLFAALFSPVELILVVIAGSIMLDEPLYLGSLIGGVLIVVGLYMVLWGQNKELQMTTQLEAEHIEGANTMGTWRALEGDAR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3287 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 323 - -
Lja6g3287 354 PANTHER WAT1-RELATED PROTEIN 9 335 IPR030184 GO:0016021|GO:0022857
Lja6g3287 354 Pfam EamA-like transporter family 6 148 IPR000620 GO:0016020|GO:0016021
Lja6g3287 354 Pfam EamA-like transporter family 179 319 IPR000620 GO:0016020|GO:0016021
Lja6g3287 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 146 - -
Lja6g3287 354 PANTHER WAT1-RELATED PROTEIN 9 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3287 Lja-Chr6 61189189 61191053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3287 5 338 Nodulin-like Gene Family AT1G25270 36.499 1.15e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3287 - - lja:Lj6g3v2218360.1 665.225