Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3280 ATGTCTTCATCTTCGATTCCAATTCCAATCGCCATGCATTCTTCTTCAACTGTGTCTGCCTCTGTGACGGTGACGCAGATGCGTATTACACAGACGGCAAATTTCAAACCTCTGAGCCACCGTTTGGGCAGAGGCTTGCCGCTCATCCAGCTCCATCGCCGCCTCAACTATGGCGCCTCTTTCCGCTGCTCAGCTGCTTCTTCCGGTGGTGGTGACGGCGATGCTATCGTTCTCCATGTTGGGGGGATGATGTGTGAGGGTTGTGCAGATAATGTCAAAAAACTTCTTCAAAGTCGACCACAAGTGTCATCTGCTAGTGTAAATCTAGCATCTGAGATAGCAATAGTTTACCCTGCATCCGAAGAAAAAACGGCACCAGATTGGCAAAAGCAATTAGGAGAGGCACTTGCGGAGCATTTAACTAACTGTGGTTTCAGTTCTAGCCTTCAAGGTTAG 456 0.4868 MSSSSIPIPIAMHSSSTVSASVTVTQMRITQTANFKPLSHRLGRGLPLIQLHRRLNYGASFRCSAASSGGGDGDAIVLHVGGMMCEGCADNVKKLLQSRPQVSSASVNLASEIAIVYPASEEKTAPDWQKQLGEALAEHLTNCGFSSSLQG* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3280 151 PANTHER ATP7, ISOFORM B 68 148 - -
Lja6g3280 151 Gene3D - 74 150 - -
Lja6g3280 151 CDD HMA 77 133 IPR006121 GO:0046872
Lja6g3280 151 Pfam Heavy-metal-associated domain 78 145 IPR006121 GO:0046872
Lja6g3280 151 ProSiteProfiles Heavy-metal-associated domain profile. 75 149 IPR006121 GO:0046872
Lja6g3280 151 SUPERFAMILY HMA, heavy metal-associated domain 76 130 IPR036163 GO:0046872
Lja6g3280 151 ProSitePatterns Heavy-metal-associated domain. 80 109 IPR017969 GO:0046872
Lja6g3280 151 PANTHER COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC 68 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3280 Lja-Chr6 61150021 61152040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3280 74 148 Primary Pumps ATPases AT4G33520 65.333 8.40e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3280 - K17686 lja:Lj4g3v1235940.1 140.969