Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3279 ATGTCGGAGCCTGCTTCGTATGGTCCTCGATTAGATCTTCAGGAATTACAGCGTGAAGCCCAGAATCGGTGGCTGCGACCTGCGGAAATTTGTGAAATTCTTCGTAACTATCGGATGTTTGATATCACATCAGAACCTCATAACAAGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGCAAAGTTTTGAGATACTTCAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTAAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCTCATGGAGAAGAAAATGAAAACTTTCAAAGGCGAAGCTATTGGATGCTTGAACAGGATATGATGCACATAGTATTTGTGCACTACTTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAATACTAATAGTGATGGAGTCATATCAGACTCCCAGGTCAACTCTCCATCATCTGGCTTTCCCGCTAGTTATAGCAGTGTGCCTTCACTGAGTACAGAGGCTATGAGCCCGACTAGCAGTTTGACATCTTTACGGGAAGATGCTGATTCTGGTGATCATGGGCAGTCATCAATTTCTGGAACTGATTATATCCCTCTGTTCGACGGGGATAAATTTAGAGGAAATGATACTACTTATATTGATGGTCTGAAAGGTCACGGCATAGCATCATGGGACAATGTCTTGCAGTGCACTACCGAGTTAAATACTGATCCTTCTCTTGTGTCATTTCCTTCCATCCTATCTGGTTCAATGAGAAACATCCTTGAACAAGAACATAACATTTTGGATGACCTTTTAATGAGCAAAAGTGGCCCCAGTGATGAAGCAGGGAGCTCTCAGTCTCTCCAATCTAATTGGCAGATTCCTTTTGAAGGCAATGTAGGACACATCCAGGCCTTAACCCAATCATTGAGTTCGGAATTTGGATCTGATTATGGCAGTGGTCTACTAAGGAATGAGGCTCATAATGGAAGTTCTGAGGTTTTTTCTGTCCTGTCTCATTTTCATGGTCAGCCAAAACAGCAGCTTATGCAGCAAAATTATCCAGAACAGCATTTTGAAGGACAACCTCAACATGCACTAACATCTGATTCTGCCAATAGAGTTCCTGGTGAAGAAACTATTAACTATCCCTTAACCGTGAGGCGCACATTATTGGACCGTGATGAGAGCTTGAAGAAGGTTGATAGCTTCTCACGGTGGATTACTAAAGAACTCGGAGAGGTGGATGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGCTAGATGATACATCATTGAGTCCATCTATCTCTCAGGACCAACTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATCATTGGATCATTTTTGATGAGTCAACCAGAAGTGAGGACCAGTAACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCATGCTGAGGTTTTATCTAACGGAATTCTGTGCTGTCAAGCTCCTCATCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGCTCCAATAGGTTAGCTTGTAGTGAAGTACGGGAGTTTGACTACAGAGAGGGCTTTTCTAGAAAAGTTGGCATTGAAGATTTTTTCAATAGTTCAACTGATATGCTGCTTCATTTGCGACTGGAGGAATTGCTTTCTCTCATGCCAGTGCACCCTCCAAATCAAACCTTTGAGGGTGATGTGGAGAAAAGAAACTTAATTTTTAACCTTATTTCACTAAGAGAGGAAGAGGAATTTTCAACTAAGGAAGAGCTAACTGTAGAGATGGATATATCACAACAGAAGGAGCATCTGTTTTGCAGACAGGTTAAAGAGAAGCTCTACTCATGGCTTCTTCACAAAGTAACTGAGGGTGGTAAAGGGCCAAATGTGTTAGATAACGATGGGCAGGGTGCGCTACATTTGGCAGCTGTGCTTGGTTATGATTGGGCCATAACCCCAATTTTAACTGCTGGTGTTAATATCAACTTCCGTGACGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAACGGACAGTTGCATTCCTTGTTTCCATGGGAGCAGATTCTGGAGCACTGACAGATCCATCTCCAGCATTTCCTTTAGGTAGAACAGCTGCCGATCTTGCCTCTAGCAATGGGCACAAGGGAATCTCTGGTTTCCTTGCGGAGTCTTCATTAACTAGCCACCTGGAGTCTCTCACAATGGATGATCAACTTAAAGGTGGTCGGCAAGAAATTTCCGGAATGAAAGCGGTGCAGACAGTTTCAGAACGAACTCCAACACCTGTGCTCTATAATGATATGCCAGATGCCCTCTGCCTTAAGGATTCTCTCACGGCTGTCCGTAATGCTACCCAAGCTGCAGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGACTGAAGATGGTGAGTTTGATTTGTTAGATCAGCAAGCTCTTTCCCTTCTAGCATCTAAGGCAAGCAAATCTGGACTAGGAGATGGTTTAGCCAATGCTGCTGCAGTACAAATACAGAAAAAATTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAGTCATTTGGTCTGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGACGCAAGGGTAGTGGTTTACGAGGATTCCGACCAGATGCCGTTAATAAAGTTCCCTGCCTACAACAAAATGATTCTCAGAAGGAGGATGAATATGATTATCTTAAGGAAGGACGGAAGCAAAGTGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGAGCTCAATACCGGCGCTTGCTAAATGTTGTTGATGACTTCCGTCAAAAGAAGGCGAGCAATATGGATTTGATCCATTCTGAAGAGACAGTTGATGGTATGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3126 0.4242 MSEPASYGPRLDLQELQREAQNRWLRPAEICEILRNYRMFDITSEPHNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLEVKGNKSNIGGNTNSDGVISDSQVNSPSSGFPASYSSVPSLSTEAMSPTSSLTSLREDADSGDHGQSSISGTDYIPLFDGDKFRGNDTTYIDGLKGHGIASWDNVLQCTTELNTDPSLVSFPSILSGSMRNILEQEHNILDDLLMSKSGPSDEAGSSQSLQSNWQIPFEGNVGHIQALTQSLSSEFGSDYGSGLLRNEAHNGSSEVFSVLSHFHGQPKQQLMQQNYPEQHFEGQPQHALTSDSANRVPGEETINYPLTVRRTLLDRDESLKKVDSFSRWITKELGEVDDLNMQSSPGISWSTDECGHVLDDTSLSPSISQDQLFSINDFSPKWAYAESEIEVLIIGSFLMSQPEVRTSNWSCMFGEVEVHAEVLSNGILCCQAPHHKVGRVPFYVTCSNRLACSEVREFDYREGFSRKVGIEDFFNSSTDMLLHLRLEELLSLMPVHPPNQTFEGDVEKRNLIFNLISLREEEEFSTKEELTVEMDISQQKEHLFCRQVKEKLYSWLLHKVTEGGKGPNVLDNDGQGALHLAAVLGYDWAITPILTAGVNINFRDVNGWTALHWAASCGRERTVAFLVSMGADSGALTDPSPAFPLGRTAADLASSNGHKGISGFLAESSLTSHLESLTMDDQLKGGRQEISGMKAVQTVSERTPTPVLYNDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQTEDGEFDLLDQQALSLLASKASKSGLGDGLANAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKVILRWRRKGSGLRGFRPDAVNKVPCLQQNDSQKEDEYDYLKEGRKQSEEKIQKALSRVKSMVQYPEARAQYRRLLNVVDDFRQKKASNMDLIHSEETVDGMEDLIDIDMLLDDDNFIPIAFD* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3279 1041 MobiDBLite consensus disorder prediction 144 187 - -
Lja6g3279 1041 Gene3D - 615 794 IPR036770 -
Lja6g3279 1041 Pfam IQ calmodulin-binding motif 889 908 IPR000048 GO:0005515
Lja6g3279 1041 Pfam IQ calmodulin-binding motif 866 884 IPR000048 GO:0005515
Lja6g3279 1041 ProSiteProfiles CG-1 DNA-binding domain profile. 13 139 IPR005559 GO:0003677
Lja6g3279 1041 SUPERFAMILY E set domains 457 543 IPR014756 -
Lja6g3279 1041 ProSiteProfiles Ankyrin repeat region circular profile. 655 686 - -
Lja6g3279 1041 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Lja6g3279 1041 MobiDBLite consensus disorder prediction 144 201 - -
Lja6g3279 1041 ProSiteProfiles Ankyrin repeat region circular profile. 688 714 - -
Lja6g3279 1041 SMART CG_1_2 16 134 IPR005559 GO:0003677
Lja6g3279 1041 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 192 1041 - -
Lja6g3279 1041 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 192 1041 - -
Lja6g3279 1041 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 194 - -
Lja6g3279 1041 ProSiteProfiles IQ motif profile. 887 911 IPR000048 GO:0005515
Lja6g3279 1041 SMART iq_5 863 885 IPR000048 GO:0005515
Lja6g3279 1041 SMART iq_5 886 908 IPR000048 GO:0005515
Lja6g3279 1041 SMART ANK_2a 688 717 IPR002110 GO:0005515
Lja6g3279 1041 SMART ANK_2a 655 684 IPR002110 GO:0005515
Lja6g3279 1041 SMART ANK_2a 727 756 IPR002110 GO:0005515
Lja6g3279 1041 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Lja6g3279 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 865 914 IPR027417 -
Lja6g3279 1041 Gene3D Immunoglobulins 450 545 IPR013783 -
Lja6g3279 1041 Pfam IPT/TIG domain 457 535 IPR002909 -
Lja6g3279 1041 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 194 - -
Lja6g3279 1041 Gene3D - 864 910 - -
Lja6g3279 1041 SUPERFAMILY Ankyrin repeat 644 749 IPR036770 -
Lja6g3279 1041 ProSiteProfiles IQ motif profile. 864 893 IPR000048 GO:0005515
Lja6g3279 1041 Pfam Ankyrin repeats (3 copies) 660 749 IPR002110 GO:0005515
Lja6g3279 1041 Pfam CG-1 domain 19 132 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3279 Lja-Chr6 61100242 61109358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3279 1 1007 CAMTA Transcription Factor Family AT5G64220 53.510 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja6g3279 CG-1 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3279 K21596 - gmx:100818124 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4043 4 73566096 73575879 Lja6g3279 6 61100242 61109358 PCT