LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g3279	ATGTCGGAGCCTGCTTCGTATGGTCCTCGATTAGATCTTCAGGAATTACAGCGTGAAGCCCAGAATCGGTGGCTGCGACCTGCGGAAATTTGTGAAATTCTTCGTAACTATCGGATGTTTGATATCACATCAGAACCTCATAACAAGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGCAAAGTTTTGAGATACTTCAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTAAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCTCATGGAGAAGAAAATGAAAACTTTCAAAGGCGAAGCTATTGGATGCTTGAACAGGATATGATGCACATAGTATTTGTGCACTACTTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAATACTAATAGTGATGGAGTCATATCAGACTCCCAGGTCAACTCTCCATCATCTGGCTTTCCCGCTAGTTATAGCAGTGTGCCTTCACTGAGTACAGAGGCTATGAGCCCGACTAGCAGTTTGACATCTTTACGGGAAGATGCTGATTCTGGTGATCATGGGCAGTCATCAATTTCTGGAACTGATTATATCCCTCTGTTCGACGGGGATAAATTTAGAGGAAATGATACTACTTATATTGATGGTCTGAAAGGTCACGGCATAGCATCATGGGACAATGTCTTGCAGTGCACTACCGAGTTAAATACTGATCCTTCTCTTGTGTCATTTCCTTCCATCCTATCTGGTTCAATGAGAAACATCCTTGAACAAGAACATAACATTTTGGATGACCTTTTAATGAGCAAAAGTGGCCCCAGTGATGAAGCAGGGAGCTCTCAGTCTCTCCAATCTAATTGGCAGATTCCTTTTGAAGGCAATGTAGGACACATCCAGGCCTTAACCCAATCATTGAGTTCGGAATTTGGATCTGATTATGGCAGTGGTCTACTAAGGAATGAGGCTCATAATGGAAGTTCTGAGGTTTTTTCTGTCCTGTCTCATTTTCATGGTCAGCCAAAACAGCAGCTTATGCAGCAAAATTATCCAGAACAGCATTTTGAAGGACAACCTCAACATGCACTAACATCTGATTCTGCCAATAGAGTTCCTGGTGAAGAAACTATTAACTATCCCTTAACCGTGAGGCGCACATTATTGGACCGTGATGAGAGCTTGAAGAAGGTTGATAGCTTCTCACGGTGGATTACTAAAGAACTCGGAGAGGTGGATGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGCTAGATGATACATCATTGAGTCCATCTATCTCTCAGGACCAACTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATCATTGGATCATTTTTGATGAGTCAACCAGAAGTGAGGACCAGTAACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCATGCTGAGGTTTTATCTAACGGAATTCTGTGCTGTCAAGCTCCTCATCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGCTCCAATAGGTTAGCTTGTAGTGAAGTACGGGAGTTTGACTACAGAGAGGGCTTTTCTAGAAAAGTTGGCATTGAAGATTTTTTCAATAGTTCAACTGATATGCTGCTTCATTTGCGACTGGAGGAATTGCTTTCTCTCATGCCAGTGCACCCTCCAAATCAAACCTTTGAGGGTGATGTGGAGAAAAGAAACTTAATTTTTAACCTTATTTCACTAAGAGAGGAAGAGGAATTTTCAACTAAGGAAGAGCTAACTGTAGAGATGGATATATCACAACAGAAGGAGCATCTGTTTTGCAGACAGGTTAAAGAGAAGCTCTACTCATGGCTTCTTCACAAAGTAACTGAGGGTGGTAAAGGGCCAAATGTGTTAGATAACGATGGGCAGGGTGCGCTACATTTGGCAGCTGTGCTTGGTTATGATTGGGCCATAACCCCAATTTTAACTGCTGGTGTTAATATCAACTTCCGTGACGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAACGGACAGTTGCATTCCTTGTTTCCATGGGAGCAGATTCTGGAGCACTGACAGATCCATCTCCAGCATTTCCTTTAGGTAGAACAGCTGCCGATCTTGCCTCTAGCAATGGGCACAAGGGAATCTCTGGTTTCCTTGCGGAGTCTTCATTAACTAGCCACCTGGAGTCTCTCACAATGGATGATCAACTTAAAGGTGGTCGGCAAGAAATTTCCGGAATGAAAGCGGTGCAGACAGTTTCAGAACGAACTCCAACACCTGTGCTCTATAATGATATGCCAGATGCCCTCTGCCTTAAGGATTCTCTCACGGCTGTCCGTAATGCTACCCAAGCTGCAGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGACTGAAGATGGTGAGTTTGATTTGTTAGATCAGCAAGCTCTTTCCCTTCTAGCATCTAAGGCAAGCAAATCTGGACTAGGAGATGGTTTAGCCAATGCTGCTGCAGTACAAATACAGAAAAAATTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAGTCATTTGGTCTGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGACGCAAGGGTAGTGGTTTACGAGGATTCCGACCAGATGCCGTTAATAAAGTTCCCTGCCTACAACAAAATGATTCTCAGAAGGAGGATGAATATGATTATCTTAAGGAAGGACGGAAGCAAAGTGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGAGCTCAATACCGGCGCTTGCTAAATGTTGTTGATGACTTCCGTCAAAAGAAGGCGAGCAATATGGATTTGATCCATTCTGAAGAGACAGTTGATGGTATGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA	3126	0.4242	MSEPASYGPRLDLQELQREAQNRWLRPAEICEILRNYRMFDITSEPHNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLEVKGNKSNIGGNTNSDGVISDSQVNSPSSGFPASYSSVPSLSTEAMSPTSSLTSLREDADSGDHGQSSISGTDYIPLFDGDKFRGNDTTYIDGLKGHGIASWDNVLQCTTELNTDPSLVSFPSILSGSMRNILEQEHNILDDLLMSKSGPSDEAGSSQSLQSNWQIPFEGNVGHIQALTQSLSSEFGSDYGSGLLRNEAHNGSSEVFSVLSHFHGQPKQQLMQQNYPEQHFEGQPQHALTSDSANRVPGEETINYPLTVRRTLLDRDESLKKVDSFSRWITKELGEVDDLNMQSSPGISWSTDECGHVLDDTSLSPSISQDQLFSINDFSPKWAYAESEIEVLIIGSFLMSQPEVRTSNWSCMFGEVEVHAEVLSNGILCCQAPHHKVGRVPFYVTCSNRLACSEVREFDYREGFSRKVGIEDFFNSSTDMLLHLRLEELLSLMPVHPPNQTFEGDVEKRNLIFNLISLREEEEFSTKEELTVEMDISQQKEHLFCRQVKEKLYSWLLHKVTEGGKGPNVLDNDGQGALHLAAVLGYDWAITPILTAGVNINFRDVNGWTALHWAASCGRERTVAFLVSMGADSGALTDPSPAFPLGRTAADLASSNGHKGISGFLAESSLTSHLESLTMDDQLKGGRQEISGMKAVQTVSERTPTPVLYNDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQTEDGEFDLLDQQALSLLASKASKSGLGDGLANAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKVILRWRRKGSGLRGFRPDAVNKVPCLQQNDSQKEDEYDYLKEGRKQSEEKIQKALSRVKSMVQYPEARAQYRRLLNVVDDFRQKKASNMDLIHSEETVDGMEDLIDIDMLLDDDNFIPIAFD*	1042

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g3279	1041	MobiDBLite	consensus disorder prediction	144	187	-	-
	Lja6g3279	1041	Gene3D	-	615	794	IPR036770	-
	Lja6g3279	1041	Pfam	IQ calmodulin-binding motif	889	908	IPR000048	GO:0005515
	Lja6g3279	1041	Pfam	IQ calmodulin-binding motif	866	884	IPR000048	GO:0005515
	Lja6g3279	1041	ProSiteProfiles	CG-1 DNA-binding domain profile.	13	139	IPR005559	GO:0003677
	Lja6g3279	1041	SUPERFAMILY	E set domains	457	543	IPR014756	-
	Lja6g3279	1041	ProSiteProfiles	Ankyrin repeat region circular profile.	655	686	-	-
	Lja6g3279	1041	ProSiteProfiles	Ankyrin repeat profile.	688	720	IPR002110	GO:0005515
	Lja6g3279	1041	MobiDBLite	consensus disorder prediction	144	201	-	-
	Lja6g3279	1041	ProSiteProfiles	Ankyrin repeat region circular profile.	688	714	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g3279	Lja-Chr6	61100242	61109358	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g3279	1	1007	CAMTA Transcription Factor Family	AT5G64220	53.510	0.0	1033

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CAMTA	Lja6g3279		CG-1	1.3e-50	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g3279	K21596		-	gmx:100818124	1584.7

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g4043	4	73566096	73575879	Lja6g3279	6	61100242	61109358	PCT

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