Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3278 ATGGATTCTCTTTGTTGCTTCAACTCTGCCAATCAGGCGGGTGGAGGACGTTCGTCATCTAGCTCTGGGAAGGGCAAAAGCTATCTGTGCCCTGTTAAGTATGGCTTTAGCCTAGTTAAAGGTAGGGCAAACCACCCAATGGAGGATTTTCACGTTGCAAAAATCATCCAGAACAAAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGACACTTAGGGGACAGTGTGCCCGCCTATTTACAGAAGCATCTCTTTTCCAATATCTTGAAGGAAGAGGATTTCTGGACTGATACAAACAGTTCCATCATTAAAGCTTATGAGACAACAGATGAGGCCATTCTTTCTCACAGTTCTGATTTGGGGGTAGGAGGATCAACTGCAGTTACTGCCATCCTTTTAAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCTAGGAGAGGGGAGGCCATACAAATGACAATTGATCATGAGCCCAATACTGAAAGGGGCATCATCGAAAACAAAGGCGGCTTTGTCTCAAACATGCCAGGAGATGTTGCGAGAGTGAATGGGCAGCTTGCTGTTTCACGGGCATTTGGAGACAAAAACCTAAAGTCACATTTGAGATCCGATCCCGACATTCGTCACGACGAAATTGACTCAGATACTGAGTTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAACCAAGAGGCAGTTGATATTGCAAAAAAGATCAAAGATCCACAAAAGGCAGCAAAACAATTAACTGCCGAGGCATTGAACAGAGAGAGTAAAGATGATATTTCCTGCATTGTGGTTCGTTTCAAGTGA 846 0.4338 MDSLCCFNSANQAGGGRSSSSSGKGKSYLCPVKYGFSLVKGRANHPMEDFHVAKIIQNKGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDTNSSIIKAYETTDEAILSHSSDLGVGGSTAVTAILLNNQKLWVANVGDSRAVLSRRGEAIQMTIDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDIRHDEIDSDTEFLILASDGLWKVMANQEAVDIAKKIKDPQKAAKQLTAEALNRESKDDISCIVVRFK* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3278 281 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
Lja6g3278 281 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 280 - -
Lja6g3278 281 Pfam Protein phosphatase 2C 42 273 IPR001932 -
Lja6g3278 281 Gene3D - 16 281 IPR036457 -
Lja6g3278 281 SMART PP2C_4 29 278 IPR001932 -
Lja6g3278 281 SUPERFAMILY PP2C-like 27 281 IPR036457 -
Lja6g3278 281 PANTHER PROTEIN PHOSPHATASE 2C 1 280 IPR015655 GO:0004722|GO:0006470
Lja6g3278 281 CDD PP2Cc 32 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3278 Lja-Chr6 61093345 61097939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3278 1 281 PP2C-type Phosphatase Gene Family AT1G22280 69.686 4.41e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3278 K17506 - gmx:100787659 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4041 4 73553441 73558201 Lja6g3278 6 61093345 61097939 PCT