Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3272 ATGAGATACAACAACCTGAAAATTTTAACTGTGGATAGATGTAAATCATTAACAACTATTTTTTACCTTCAAGATGATAAACCAGATCAAGCTATTGAAGCAATGTTTCATCAACTAATGGCAGTAGAACTAAGGAACCTATGCAGTCTGAGACAGATATGGTACATGGATCTTAAAGTTCCATTCTTCCAAAGTTTAAAATCACTTCACATTGTCCATTGCGGTAACCTCAAGAGTGTATTCTCACTTCCTGCTGTTAAAAATCTGACACAACTCAAATTACTCAAGCTATATAATTGTGAGAAATTGATTGAGGTAATAGAAGGCGACGAAGTTGGAAATTTACCAATCACTTTCCCCGAAGTAGAATGTCTTATACTCAAAGATCTTCCAAACATGGTCCATTTTTATGGACAGAGTAAAAGAACTTTTAATTGCCCTAAACTACAGACGATCAGGGTGAAGAATATTCGAAGTATGGTTACATTTTGTGACGGTCATCTTAACACGCCTATGCTGAGAACAGTTTCGGTATCCTTTGTGAAGAGATGCTGGCATGGAGACTTGAACAATACCATACGTCACTTAAATGGATATGCAGCTTTCAATAATATAACTTTCTTTGAAGATTCCCCTGATGGCTTTAGCTTTAAGGACTTACATAATGCTTCATATGAAGTTCTTGGAAAAGGGAGTCTTGGAACAACATACAAGGCTACTTTGGATGATGGAACAAAAGTGGTAGTGAAAAAGTTGATAGATCCAAGCAAGGAGAAATGGCAGAAATTGGCGAGTTTAAGGAGTATGGGGCGGCACCCTAATGTCATGCCTCTTCAAGCATATTATAATTCTATAGATGAGATGCTTCTAGTTTACCCCTACATGCCAAGAGGCAGCTTATTTTCCTATTTACATGGCAATAAGGCTGAGAAAAAAACTCGATTATTAGATTGGAATTCAAAAGTGAACATTGCACTTGGAGTTGCCAAGGGAATTGCTTTCATTCATTCTAAGGGGGGTCCAAATTTTACACATGGAAACTTAAAGTCAACCAATGTTTTCTTCACACAAAATCTTGATGATGCCTGCATCTCTGATGTTAGATTGACTTCTCAAATGAATGATTCATCATCTTCTTTTATGTCTAAAACTCTAGAAGTTACTAATTCCAGGCAGATCACTCAGGGCTCTGATGTTTATAGCTTCAGTGCGATTCTTGTTCAAATACTGGTTAGAGTTTTTCCGTATAGTTTGGCTTATGAAAGTTTTTTAAGGTTTACGTCACGGGGGCTACTTGTGTTATTTGATGTAGAGCTAGCAGACATTAATGAAGTTCAATTGGATCTTATGCGTCGGATTGTGCGTAAATGTACAGATGGGTCAAGCCCTAGAATGGAAGAAGTTGTTAGAATGATTGAGGCAGTTAAGAATGGAAGAAGTTCAATTGAATTCAATTGA 1458 0.369 MRYNNLKILTVDRCKSLTTIFYLQDDKPDQAIEAMFHQLMAVELRNLCSLRQIWYMDLKVPFFQSLKSLHIVHCGNLKSVFSLPAVKNLTQLKLLKLYNCEKLIEVIEGDEVGNLPITFPEVECLILKDLPNMVHFYGQSKRTFNCPKLQTIRVKNIRSMVTFCDGHLNTPMLRTVSVSFVKRCWHGDLNNTIRHLNGYAAFNNITFFEDSPDGFSFKDLHNASYEVLGKGSLGTTYKATLDDGTKVVVKKLIDPSKEKWQKLASLRSMGRHPNVMPLQAYYNSIDEMLLVYPYMPRGSLFSYLHGNKAEKKTRLLDWNSKVNIALGVAKGIAFIHSKGGPNFTHGNLKSTNVFFTQNLDDACISDVRLTSQMNDSSSSFMSKTLEVTNSRQITQGSDVYSFSAILVQILVRVFPYSLAYESFLRFTSRGLLVLFDVELADINEVQLDLMRRIVRKCTDGSSPRMEEVVRMIEAVKNGRSSIEFN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3272 485 PANTHER OS05G0588300 PROTEIN 202 478 - -
Lja6g3272 485 SUPERFAMILY L domain-like 6 180 - -
Lja6g3272 485 Pfam Protein kinase domain 226 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3272 485 ProSiteProfiles Protein kinase domain profile. 222 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3272 485 SUPERFAMILY Protein kinase-like (PK-like) 225 458 IPR011009 -
Lja6g3272 485 Gene3D Ribonuclease Inhibitor 2 184 IPR032675 -
Lja6g3272 485 PANTHER LRR RECEPTOR-LIKE KINASE 202 478 - -
Lja6g3272 485 Gene3D Transferase(Phosphotransferase) domain 1 213 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3272 Lja-Chr6 61062058 61069455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3272 203 476 Receptor kinase-like Gene Family AT5G58300 39.933 7.12e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja6g3272 Pkinase 8.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3272 - - lja:Lj6g3v2218100.1 966.837