Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3270 ATGGCGAACGAAAAAGCAGTGGTGAAGATGGAGTGGTTAACTTCCATAGACACAACCACTCTCTCCCACTCTGAACTTCACGCCCTTTCTCTCTCCTCTCTCCCAACCTTCGATCCCACCCTCACCCCCATAATCGACCCTACCTACTTCAACGAAAGCTCCGGCACTCACCGTCAGTCCTACGCCACACCTCGCCAGCGCCGCCGATGCCGTGTCTCCGCCCTCCTCCCCTCTCCCACCCCTTCCGACCACCCCCGCATCATCGTCGACTATCTCAAGCACCTCATCAGAGAAGACCCCAAGTTCGACCAGGTGGAGCTCCTGCAACCACCGCAACAACGCCTCATCGTTCCCGAACCTCCAATCGGTGAGGTGAAGAGGAAGCGAGGGAGGAAGCCCAAGGTCAGAGTGCATCTGGAAGAGTGTTACAGAGGAATGGAGAGGGTGAACAAGAACGGCGTTCCAGTTGAATTCTCCGCGCTGGCCAGCGCGGAGAATCCGTTCGCGGAGGAGCTGGCTAGGCGGACGGAGGGGCTGCAGGGGGAAGAGCAGCTGTTAGGGTTTTTGAGGGATTTGGTGGGGCAGTGGGGAAGCAGGAGGAAGAAGAGGAGGATTGTTGATGCTGCTGATTTCGGTGATGCCTTGCCTGTTGGTTGGAAGCTTCTGCTCGGTTTGAAGAGAAAGGATGGTCGTGCTTGGATCTATTGCCGCAGATACATCAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAGGAGGTTTCGGCGTATTTGCAGTCCCTTTTCGGTCAGGCTGAACCACAATTAAAAATCAGTTGTAGGAATGAAAATATTCTGCAGGAGCAGAGAGTGACTACGGAGAACTCTGCAGGTGTTACTGGTGAGGATCAAGATCAGAGGCAGATTGCAGCGACTAACTCGGATGTGCCTGGTTTATCTGTTTCTAATGAACGAGTGAAGGAAGTTTCCTTGTTAGGGATTGAGAATCTTGCAGATGTGCAAATACATGACCTGTTTGAATGTCACAAATGCAGCATGACCTTTGGTGAGAAAGATTCATACTTGCAGCATCTGTTGTCCGTTCACCAGAGGACGACCAGGCGGTACCGACTTGGTTCTACTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAATTCTGCCATAAGGTGTTTCTAGAAAGGCGTCGCTACAATGGTCATGTCGGGATCCATGTTAGGAATTATGTGAGGAGAGTTGAAGATTCACCAGGTCAGACAAATGTCCAAAGAGCAGACAAATCTCCGGTCCTGGAGGAGGTGCCTTCAAGGATCTCTAAGATGGATGCGCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCATGGAACCCCATAATTCAGCTAAAATGAATGTGATACCCGATTCTGAAATTGCTGTTGGTGACTTTGACCAAGACATGGACTTTGAATATCCTACCGATGTGGTGGATGATTTAAATCTGCAATGTAGCACGCATTTACTCATGAATGGAAAAGGAGATGAAATTGATGATTATAACCAAGTTATTGATGCAGAGGGGGTTACTCTTCTAGATAGCATGGATTTGTCATATGTAAACGAGCAAAATGTCCATGTATCTGGTACTTCAAAGGGAAAAGAAGATGTTGCGTTGACAGCTGCGGGGTTTGGCCAGTCTGGGATTGATTTGGAAGTGGTTTCTCAAAGCCCTTTATTTCCTTTATCTGGTTGCACTAACAGTAAAGGGCAATTCAAACTTGATGAAGACAATAGCAAGAACAGTGAGTTGAAATTTAGTTTAGATGGCTGCAAGGATGTACCTGTTAGGGCTGATTTTCAAGAGATAGTCATGTCAGTTTCTGAAGAAGTTGTGGTCCATTCTAGCATTTCTAACCGCTCTATATCCACAGAACAACCTCTGGATTGTTTTCCAGCCTTCAGCTCTGATAAGATATAA 1971 0.4769 MANEKAVVKMEWLTSIDTTTLSHSELHALSLSSLPTFDPTLTPIIDPTYFNESSGTHRQSYATPRQRRRCRVSALLPSPTPSDHPRIIVDYLKHLIREDPKFDQVELLQPPQQRLIVPEPPIGEVKRKRGRKPKVRVHLEECYRGMERVNKNGVPVEFSALASAENPFAEELARRTEGLQGEEQLLGFLRDLVGQWGSRRKKRRIVDAADFGDALPVGWKLLLGLKRKDGRAWIYCRRYISPSGQQFVSCKEVSAYLQSLFGQAEPQLKISCRNENILQEQRVTTENSAGVTGEDQDQRQIAATNSDVPGLSVSNERVKEVSLLGIENLADVQIHDLFECHKCSMTFGEKDSYLQHLLSVHQRTTRRYRLGSTVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQTNVQRADKSPVLEEVPSRISKMDALIEIAQNSIMEDSVMEPHNSAKMNVIPDSEIAVGDFDQDMDFEYPTDVVDDLNLQCSTHLLMNGKGDEIDDYNQVIDAEGVTLLDSMDLSYVNEQNVHVSGTSKGKEDVALTAAGFGQSGIDLEVVSQSPLFPLSGCTNSKGQFKLDEDNSKNSELKFSLDGCKDVPVRADFQEIVMSVSEEVVVHSSISNRSISTEQPLDCFPAFSSDKI* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3270 656 ProSitePatterns Zinc finger C2H2 type domain signature. 340 361 IPR013087 -
Lja6g3270 656 ProSitePatterns Zinc finger C2H2 type domain signature. 387 407 IPR013087 -
Lja6g3270 656 Gene3D - 195 304 - -
Lja6g3270 656 SMART c2h2final6 385 407 IPR013087 -
Lja6g3270 656 SMART c2h2final6 338 361 IPR013087 -
Lja6g3270 656 ProSiteProfiles Zinc finger C2H2 type domain profile. 385 412 IPR013087 -
Lja6g3270 656 Gene3D Classic Zinc Finger 327 410 - -
Lja6g3270 656 ProSiteProfiles Zinc finger C2H2 type domain profile. 338 366 IPR013087 -
Lja6g3270 656 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 654 IPR037472 -
Lja6g3270 656 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 205 277 IPR001739 GO:0003677
Lja6g3270 656 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 6 654 - -
Lja6g3270 656 SUPERFAMILY DNA-binding domain 211 260 IPR016177 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g3270 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3270 - - gmx:100526917 731.865