LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g3260	ATGGAGAAGAACACCGAGGATCCAGGTCACTGGAAGAAGCCAATGGCCAGCTACCTCGTCCGCCACCATCCCGATCAGCTCAACTCCATTGCTTCTTCTCCCGATCCCAACATTCATTACCCTCTTCACATCGATTTCGCTGAGTTGATGGAAGATGATCATCGCATTGCCCATCTCCTCTTTGCCCAACCCAACACCTACCTGCAAATCTTCGATGACGCTGCTCTCTGGGCTCATAAAATTGTATTGGGAGATATGGAGGAAGGGGTTGAGAAAAAATTCATTCATGTTCGCGTTAACGTCTGCGGCTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATCCTTCTCACTCTCAAAGGGATAGTGATCAGGTCCGGAGCGATCAAGATGCATGAAGGAGAGAGGAAATACATGTGTCAAAAATGCCAAAGCAGCTTCCCAGTTTATCCTGAGGTGGAAGCTCGAAACGCCATATCATTACCCTCATTTTGCCCAATTCAGAGGTCTAAGCCCTGTGGAGGTGTAAAATTCCAGTATGTAGAGAATACTATAGTATGTCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAGTGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCTGTTTTGATAGCCAACAGCATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCCGATGATCTTGTTACGAAATTCAAGCAGTTTTGGGATCACTTCAAAGATGCGCCTTTAAAAGGGAGGAATGCCATTCTACGAGCAGTTTGCCCACAAGTATTTGGTCTTTTCACAGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGAACTGGGAAATCTCAGTTTCTGAAATTTGCTGCAAAATTAAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCTGTGAGGGATGGAGGCGAGTGGATGTTGGAAGCTGGAGCCCTTGTCTTGGCAGATGGAGGCTTGTGTTGCATAGATGAGTTTGACAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAAAACTACAGTATTTGGCGCTACAAATCCTAAGGGACAATATGATCCTGATCAACCTCTGTCCGTCAATACAACACTCTCTGGTCCTTTGTTAAGCAGGTTTGATATTGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGTAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCTGATAAAACCAACAATGATGAAGATCTAGCAAATATCTGGCCTCTTTCCATACTCAAGAGGTATATACACTATGTGAAAGCAAAATTCAGACCCGTCCTTACAAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTGATAATGCAGCTAGGACAACTGTGCGCATGCTGGAAAGTTTGATACGCCTAGCTCAAGCTCACGCGAGACTAATGTTCAGAAATGAGGTGACTCGACTAGATGCGATCACGGCTATTTTATGCATAGAATCCTCCATGACAACCTCAGCTATTGTGGATTGCATTGGGAATGCCCTGCATTCCAATTTTACTGAAAATCCTGATCAGGAATATGCTAAGCAAGAAAGATTGATCCTAAAAAAATTGGGATCAATAGAAGACTTCACTGACATGAATAGCATGGTGGACTGA	1986	0.4416	MEKNTEDPGHWKKPMASYLVRHHPDQLNSIASSPDPNIHYPLHIDFAELMEDDHRIAHLLFAQPNTYLQIFDDAALWAHKIVLGDMEEGVEKKFIHVRVNVCGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCQKCQSSFPVYPEVEARNAISLPSFCPIQRSKPCGGVKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANSIRRINELKSEIDISDDLVTKFKQFWDHFKDAPLKGRNAILRAVCPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVRDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDVVVSSHILSEAEPDKTNNDEDLANIWPLSILKRYIHYVKAKFRPVLTREAEIVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTENPDQEYAKQERLILKKLGSIEDFTDMNSMVD*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g3260	661	Gene3D	-	142	198	-	-
	Lja6g3260	661	PANTHER	DNA HELICASE MCM9	39	649	-	-
	Lja6g3260	661	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	39	649	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	ProSiteProfiles	MCM family domain profile.	303	506	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	Gene3D	-	277	616	IPR027417	-
	Lja6g3260	661	Pfam	MCM AAA-lid domain	529	610	IPR041562	-
	Lja6g3260	661	CDD	MCM9	306	610	-	-
	Lja6g3260	661	SMART	mcm	111	612	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	Pfam	MCM OB domain	118	246	IPR033762	-
	Lja6g3260	661	Gene3D	-	118	246	IPR012340	-
	Lja6g3260	661	Pfam	MCM P-loop domain	305	508	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	SUPERFAMILY	Nucleic acid-binding proteins	39	253	IPR012340	-
	Lja6g3260	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	344	359	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	430	443	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	480	488	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	402	416	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lja6g3260	661	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	313	620	IPR027417	-
	Lja6g3260	661	SMART	AAA_5	345	494	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g3260	Lja-Chr6	60921631	60929107	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g3260	1	635	Core DNA Replication Machinery Family	AT2G14050	75.195	0.0	1006

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g3260	K10738		-	gmx:100776255	1148.27