Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3256 ATGGTTCTTCATCACAGGAAGCTGATGATGCAAGAAGCCTGTGAATTCATCTGTCATGGAAAGGATTCAGGATCATCATGTTCATCAGACTGCAGAGTTTGCCTCAAAATCTGCCTAACCAATCCTCCTCAATTTCCTTATTTCTTCCCTTCTCCTCCACCATCACCACCACAATCTTCTTTCTACATAGATGTTGATGATCACCACCACCACCACCACAGAGTTTCCTCCTCCACCTACCTGATCCTCACTCTTGCTCTTCTCGGTGCTGCTTTCTTTGTTGTTTGCTGCAGTGCAATCTACACCAGGCTCTGTTCCAGAAACAGGGGAATAATTTCACAGAGGGAGGAAACAGAGGAGGTGCATGATGATTTTCTTGATGAAGAACATGGTGCAATTGTGGACCACCCCATTTGGTACATCCGAACTACTGGTCTTCACCAATCGATTATCAAGGCAATCACGGTTTGCAGGTATAAGAAAGGTGAGGGGTTGATTGAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAGAGTGAGAGTTTGAGACTTTTGCCTAAGTGTCACCATGCTTTTCATTTACCTTGTATTGATACATGGCTTAATTCTCATACCAATTGCCCCATGTGTCGTGCTCCCATTGTTACTGACCCTGCTGCTAGAGTTCCATCTATGGAGTCTGTTGTTGCTGTTGATTTGGAACATGCCCAGATGGAAATTTTGGAAAATAGTGGTGAATCTGGTGAAGGAATGGAAAATGATGCTTCTGATAATAATTCTGAATTGAGGAATAGGGTAGATGAAGAAGGCCAATTGGAAGTTGAAGATGGGGCTAGGATTTGTGAAGCTGAAGGCACAGATGCAGGGGTGGTGAGTATTCACCCTAAGAGATCAGTTTCTCTTGATTCTTTTTCTGTTGCAAATATCAATCTTGCTGCTATTGGAACTTTTCTATCAAGGGAATCTAATGGTGCTAACTCACATAGAGTGCTGGAGGGTGTTGTTGAATTTGAACCTGGTGTTTCAAAGAGGGTTAGTGGGAATGAGAATCTGGCTATTATATCAAAAGGTAGCTCTTCTTTCAGGTCAATGAGATATCTGAGAGGTGTTCCTAGCTCAATGAAGAGGTCACGTTCCTACAATGGGAAATACCTTCTGTCCTGGTATAGCCGCAGTCAGAAGAAGCAAAATGCTAATCTGAGAAGCTTTTAA 1218 0.4294 MVLHHRKLMMQEACEFICHGKDSGSSCSSDCRVCLKICLTNPPQFPYFFPSPPPSPPQSSFYIDVDDHHHHHHRVSSSTYLILTLALLGAAFFVVCCSAIYTRLCSRNRGIISQREETEEVHDDFLDEEHGAIVDHPIWYIRTTGLHQSIIKAITVCRYKKGEGLIEGTECSVCLSEFQESESLRLLPKCHHAFHLPCIDTWLNSHTNCPMCRAPIVTDPAARVPSMESVVAVDLEHAQMEILENSGESGEGMENDASDNNSELRNRVDEEGQLEVEDGARICEAEGTDAGVVSIHPKRSVSLDSFSVANINLAAIGTFLSRESNGANSHRVLEGVVEFEPGVSKRVSGNENLAIISKGSSSFRSMRYLRGVPSSMKRSRSYNGKYLLSWYSRSQKKQNANLRSF* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3256 405 CDD mRING-H2-C3H2C2D_ZSWM2 170 213 - -
Lja6g3256 405 SUPERFAMILY RING/U-box 165 219 - -
Lja6g3256 405 Pfam Ring finger domain 170 213 IPR001841 -
Lja6g3256 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 220 IPR013083 -
Lja6g3256 405 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 396 - -
Lja6g3256 405 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Lja6g3256 405 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 396 IPR044675 -
Lja6g3256 405 SMART ring_2 171 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3256 Lja-Chr6 60885320 60886957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3256 60 282 C3H Transcription Factor Family AT1G72220 41.667 7.51e-48 166