Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3255 ATGTCTCTCTCCGAGACCAAGAAGAAGAAGCACCGCAGCGCCACCAAAACCCACGACGGAGCCGCCACCACCGAAGATGACCACCACACCAAAGACGAACCACAGTTCATGATCAAACCCGAGAAGCTCACACCCACCATCGACACCTCCCAGTGGCCCATCCTCCTCAAAAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCTCTCCCCTCCGGCTACTCCCCTCTCAAACGCCCCCTCCCGGAGTATCTCAAATACGGCGTCCTCAACCTCGACAAGCCTGCTAACCCTTCCTCCCATGAGGTCGTCGCCTGGATCAAACGCCTCCTCCGCGTCGAGAAAACCGGCCACAGCGGCACTCTTGACCCCAAGGTCACCGGGAATCTCATTGTCTGCATTGACAGGGCCACCCGCCTTGTGAAGTCGCAGCAGGGTGCTGGGAAGGAGTATGTCTGCATTGCCCGACTTCACTCTGATGTTCCTGATGTTTCCAAGGTTGCTCGCGCCCTCGAGACGCTCACCGGTGCTGTGTTTCAACGCCCGCCGTTGATCTCTGCTGTCAAGCGCCAGCTCAGGATCAGGACCATTTATGAGAGTAAGCTTCTTGAGTATGACCCTGATAGGCATTTGGTTGTTTTTTGGATTTCATGTGAGGCTGGTACCTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTTCTTGGCGTTGGTGCTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATCATGGGTGAGAAGGATAACATGGTTACTATGCATGATGTTATTGATGCTCAGTGGGTTTTTGATAATTATAGGGATGAGAGTTATTTGAGAAGGGTTGTTATGCCTTTAGAGGTTCTTTTAACTAGCTATAAGAGGTTGGTTGTGAAGGATTCTGCTGTGAATGCTATCTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTGAGGTTTGAGAATGATATTGAGGCAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTGATGGCGACTTGCGATCACGGTGTGGTTGCTAAGATCAAGAGGGTGGTGATGGATAGAGATACCTATCCCAGGAAGTGGGGTTTGGGCCCTAGGGCTTCAATGAAGAAGAAGCTGATTGCTGCGGGGAAGCTGGATAAGCACGGGAAGCCGAATGAGAGCACTCCCCAAGAGTGGATGAGGAATCTGGTTTTGCCTGCTGGTGGGGATAGCATGATTGCCGGTTTGGCTGCTGCTGCTCCTGAAGCTGATGAGGCGAAGAAAGGCATTGCTGTAGAAGAGGGTAAGAAGGATGGAGATGGGGAAGGGCGTAAGAGGAAGAAACATGAAAGCACTGATAGCCCTGCTTCTGTTCCGGCTAAGAAAGTGAAAGTTGATGTGGTTGTAGACGAAGGGAAAGTAAAGGTGGAGGTTGAGGGTGAGAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGACAAAGAGAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGAAAAGGAGAAGAAAAAGAAGCACAAGGTAAAGGTTGAAGATGGTTCACCAGATTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATGCTGAGGATAATGCTGCTGAAATTAGTAACGGAAAGGAGGACAGTAAGAGCGAAAAGAAGCATAAGAAAAAGAAAAACAAGGACGCAGAGGAAGAATAA 1755 0.4974 MSLSETKKKKHRSATKTHDGAATTEDDHHTKDEPQFMIKPEKLTPTIDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLPEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNLVLPAGGDSMIAGLAAAAPEADEAKKGIAVEEGKKDGDGEGRKRKKHESTDSPASVPAKKVKVDVVVDEGKVKVEVEGEKKEKKKKKKKDKENGEVASSDEEKAEKEKKKKHKVKVEDGSPDLDKSEKKKKKKKDKDAEDNAAEISNGKEDSKSEKKHKKKKNKDAEEE* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3255 584 SUPERFAMILY PUA domain-like 296 377 IPR015947 -
Lja6g3255 584 MobiDBLite consensus disorder prediction 439 468 - -
Lja6g3255 584 MobiDBLite consensus disorder prediction 1 35 - -
Lja6g3255 584 ProSiteProfiles PUA domain profile. 296 371 - -
Lja6g3255 584 Coils Coil 564 584 - -
Lja6g3255 584 Pfam tRNA pseudouridylate synthase B C-terminal domain 227 293 IPR032819 -
Lja6g3255 584 CDD PseudoU_synth_hDyskerin 88 270 - -
Lja6g3255 584 Coils Coil 488 508 - -
Lja6g3255 584 TIGRFAM unchar_dom_2: uncharacterized domain 2 291 368 IPR004521 GO:0003723
Lja6g3255 584 Pfam DKCLD (NUC011) domain 49 106 IPR012960 -
Lja6g3255 584 MobiDBLite consensus disorder prediction 477 569 - -
Lja6g3255 584 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 4 583 - -
Lja6g3255 584 SMART pua_5 297 371 IPR002478 GO:0003723
Lja6g3255 584 MobiDBLite consensus disorder prediction 16 35 - -
Lja6g3255 584 TIGRFAM CBF5: putative rRNA pseudouridine synthase 56 381 IPR004802 GO:0006396
Lja6g3255 584 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 4 583 IPR004802 GO:0006396
Lja6g3255 584 Pfam PUA domain 297 369 IPR002478 GO:0003723
Lja6g3255 584 Gene3D PUA domain 49 380 IPR036974 GO:0003723
Lja6g3255 584 MobiDBLite consensus disorder prediction 434 584 - -
Lja6g3255 584 SMART DKCLD_2 48 106 IPR012960 -
Lja6g3255 584 SUPERFAMILY Pseudouridine synthase 49 294 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja6g3255 584 Pfam TruB family pseudouridylate synthase (N terminal domain) 110 226 IPR002501 GO:0006396
Lja6g3255 584 Gene3D Pseudouridine synthase 82 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3255 Lja-Chr6 60880341 60882499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3255 1 477 NAC Transcription Factor Family AT3G57150 79.455 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3255 K11131 - gmx:100806355 840.876