Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3252 ATGGTTAAGGCTCAAAGCACTTGGCCTTGTCCACAGCATGTGGCTTGGCCGTCATTTTTCAGTGGCGCCTGCGGATTTCCAGATCCCAATTCGAGTGGTCATTCAGCATATCTGAATCCTAGGACTTATATTTTTCCTGGTGTCAGTGCATTTCCAGGATTCACAGCCCCTACTTCCCCAAGCCTGAAGACTGAGCAAGCCAGTGAAGTGCAAGAATTCTTTCAGTATCCTAATTCAGAACCATATTTGAAAGAAACACATTATAGAGGGACTGTGCAAAATGCAAACCCTGCACCTCTTCAGAAGAAGTTACTTATTGTTGACCAATCTGGTACCAATACTAGATTGTTTTATAGTCCTGTCTTCCCTCATGTCCCGAGTCCAATTGTTACCGCTACACAATTTGCTCAGGCTTATGATGTGAATGGGGAAAGATGGGCAGCTAACATTGGTCAAAAGCATTTACCAAAGTACAATTTACCCGAAGAGTCAGATAAGGATCATATAGTTAATGAAGGAAGTGAAATGCATGAAGACACAAAAGAAATCAATGCATTGCTTTATTCTGATGATTCTGATTCTGGTTCTGATGATGATGATGAGGTAACAAGTTCAGACCGTTCTCCATTGGTTGCTAACAGGACATTTATGATGCAAGAACAGTTTGAGGATACAAAGGAGGAGGTTGCTAGCTCTGATTGTCCAAACAAAAGGCGTAAATTAATCAGTGGTGGATACAAAAGATTGCCATCCCCTGTGGACAGTGCTATTTCAGTAAGGCTAAACGAGACTGGTGAGGATGTCAGTGATGCTGAATCAAGGTATTCTAGCGACCAAGTGTATTCTGCCAGGGGAACTAAGGAAGATGATTCAATAATAGTGGGTGATATTCAATTGAAAAAGGATAAAATCCGTGAATCACTGAGAGTTCTTGAAAATTTAATTCCTGGAGCTAAAGGAAAGCATCCACTGTTAGTCATTGATGACACTATTGATTACTTGCAATCTTTGATGTCCCACAAGGGTATACTTGGGGTGAAATATCACTAA 1050 0.4105 MVKAQSTWPCPQHVAWPSFFSGACGFPDPNSSGHSAYLNPRTYIFPGVSAFPGFTAPTSPSLKTEQASEVQEFFQYPNSEPYLKETHYRGTVQNANPAPLQKKLLIVDQSGTNTRLFYSPVFPHVPSPIVTATQFAQAYDVNGERWAANIGQKHLPKYNLPEESDKDHIVNEGSEMHEDTKEINALLYSDDSDSGSDDDDEVTSSDRSPLVANRTFMMQEQFEDTKEEVASSDCPNKRRKLISGGYKRLPSPVDSAISVRLNETGEDVSDAESRYSSDQVYSARGTKEDDSIIVGDIQLKKDKIRESLRVLENLIPGAKGKHPLLVIDDTIDYLQSLMSHKGILGVKYH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3252 349 MobiDBLite consensus disorder prediction 188 210 - -
Lja6g3252 349 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lja6g3252 349 PANTHER TRANSCRIPTION FACTOR BHLH145 8 349 IPR037546 -
Lja6g3252 349 PANTHER TRANSCRIPTION FACTOR SAC51 8 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3252 Lja-Chr6 60854425 60862949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3252 101 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G64340 35.573 2.57e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3252 - - gmx:100778385 417.157