Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3246 ATGGAGGGTGGTTACGGCGGCAACCGGGCGGAAGCGGAGCGGTGGCTCTACACCGCGAACAAGCTCCTCAGCGCGCGTGACCTACACGGCGCCCGCTCCTTCGCGATCCGGGCTCAGGAATCCGACCCGAGGTTCGAGGCCACGGAGCTCCTCCTCGCCGTCATCGACACCCTCCTCGCCGGCGAAGCTCGGATCAAGGACCTCGTCGACTGCTACGCCATCCTCCAAGTCGTCCGCTACACTGACAACATTGAGTTCATCGCCGCCCAGTACCGCCGTCTCGCCAGCCTCCTTGACCCTCACCACAACCCATTCGCCTTCGCCGCGCATGCTTTCTCCCTTGTCCAAGACGCATGGGCTCTCCTATTCAACCCGACTAAGAAAGCATTCTACGATAACCAGCTCCGATTCATCACTGAACCACCGCAACCTCATCATGCTCCACCTCCACCACCACCACCACCACCATCTATTCATCTACACCCCGTTCAGAACCATGTAAACCCTAGCTCCGATGATGTTCCGGTGGTGGTTGCTGATGCTGTGGAAGAAGACAACAGGCCGAGTCAGGACAATGTAACTGAGCCGACTCAGCCGAGTGAGAACGATGGGAGGACTTTCTGGACGGCGTGTCCTTACTGTTATGCTATGTTTGAGTACCCTTCGGTGTATGAGGAGTGTACTCTTCGGTGCCAGAGTTGTCGGAGGGGTTTTCATGGGGTGGCGGTACGGTCTCTGCCGCCGGGTTTGACTGAGGAAGAAGGTGGGTTGACCTCGTTTTGCAGTTGGGGGTTTTTCCCTGTTGGGTTTTCTGGGGATTTGAAGAGTATTGGTGGGGCTTCTTCAGAATGGAACCCTTTTTCTCCGCTGTTTCCTTGTGCTTTGAATGGGGGTGGTTCTTCATATAGGGGAAGGAAGAGGGGTCCTAAGGTTTATTACTATGATGAGGCGGCTGTGGAGTCTGAGGAGCTTTCAGATTCGACGGAGGAGGAGGATTCCGATGACGGAGATGATGGGGATGACGATGGGGGCTGGCGGAGCAGGCTGAGGAAGAGAGGGAGGAGGAAAGGCTCTTCTGCTGCTCGTACTGGTGTTAAAAGCAATGGGAAGGCTAGGAAGGGGAATCATAATGATAGTGGGGCTGGTGATGCCAATGCCAATGCCAGTGTGGGTAATGGTGAGGTTTCTGGTGGTGCCTCTGCGCTGCCGCCTGCGGTTCCCAATTCTGTGAGGCCGGAGTCTAGCAAGAGAGGCGCTTTGGGTGGTTCGAGGAGGAGGGGTGCTGGGAACTTGGGCAAGTTGGATTTGAATGTGGAGTTTAGCAATGAGGTGGAAGAGCCTGCCCATGGAGTCAGGGAAGGGAATGGGACTGGACATGCAGAGGATAATATTGAGGGGATTGGATTTTTTGAGGGGCTTGATGAGTTCATCCTTAGTAGCTTGCCCATTCTCAATGTTGTTGCAGATGATAAGGTTAAGGGTCATTAG 1488 0.5517 MEGGYGGNRAEAERWLYTANKLLSARDLHGARSFAIRAQESDPRFEATELLLAVIDTLLAGEARIKDLVDCYAILQVVRYTDNIEFIAAQYRRLASLLDPHHNPFAFAAHAFSLVQDAWALLFNPTKKAFYDNQLRFITEPPQPHHAPPPPPPPPPSIHLHPVQNHVNPSSDDVPVVVADAVEEDNRPSQDNVTEPTQPSENDGRTFWTACPYCYAMFEYPSVYEECTLRCQSCRRGFHGVAVRSLPPGLTEEEGGLTSFCSWGFFPVGFSGDLKSIGGASSEWNPFSPLFPCALNGGGSSYRGRKRGPKVYYYDEAAVESEELSDSTEEEDSDDGDDGDDDGGWRSRLRKRGRRKGSSAARTGVKSNGKARKGNHNDSGAGDANANASVGNGEVSGGASALPPAVPNSVRPESSKRGALGGSRRRGAGNLGKLDLNVEFSNEVEEPAHGVREGNGTGHAEDNIEGIGFFEGLDEFILSSLPILNVVADDKVKGH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3246 495 Pfam DnaJ domain 70 132 IPR001623 -
Lja6g3246 495 SMART dnaj_3 69 127 IPR001623 -
Lja6g3246 495 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Lja6g3246 495 Gene3D DnaJ domain 66 137 IPR036869 -
Lja6g3246 495 MobiDBLite consensus disorder prediction 319 434 - -
Lja6g3246 495 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 6 495 - -
Lja6g3246 495 MobiDBLite consensus disorder prediction 183 202 - -
Lja6g3246 495 CDD DnaJ 70 122 IPR001623 -
Lja6g3246 495 MobiDBLite consensus disorder prediction 142 160 - -
Lja6g3246 495 SUPERFAMILY Chaperone J-domain 64 137 IPR036869 -
Lja6g3246 495 MobiDBLite consensus disorder prediction 319 340 - -
Lja6g3246 495 MobiDBLite consensus disorder prediction 140 165 - -
Lja6g3246 495 MobiDBLite consensus disorder prediction 380 394 - -
Lja6g3246 495 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 495 - -
Lja6g3246 495 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3246 Lja-Chr6 60828372 60830059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3246 11 494 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.414 3.73e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3246 - - lja:Lj6g3v2193500.1 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3246 6 60828372 60830059 Lja6g3246 6 60828372 60830059 ECH
Lja4g4010 4 73163897 73165789 Lja6g3246 6 60828372 60830059 PCT