Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3236 ATGAAAGAAAAAGCAACTGCACTTCAACTGGAAAATCTCAGGAGGTGTGTCCAAGATCTGCAAGACAAAAGACAGAAGGTTACTTGGTATCTTACAGACTTGCAAGGTCAAATTAGCTGGATAGAAAAAGTTGATGATATTGATAGAAAGGTGATTGGACTCTCAAGCAACTATGAAGGCAAAGGTGCTTGCACAATTTGGTGGTGTCAATACCGTCTTAACAAAGAAATGCGAAAGATTGAACAAAAAATCTCACAATTATACGAAGAAGGTGCAAAATATTACAACCCAAAATGCAGAACAGAATTCTTAGATGAAATTATGGCAGCCCTGAAGGACCCTCATATTCAAACAGTTGGAGTATGGGGGTTGGGTGGTGGAGGCACAACCTCATTAGTCAAACAAGTTGGAGAGCAAGTGAAAGAGCGAGGCTTGTTTGATGCAGTGGTCATCACTACCATAGTTGAGGAGCCAAATGTGGAACAAATTCAAAAAGATATTGCAAGTGTCTTGGGTCTGGAGTTTCATGAGGAACCTCGTGTGGAAAGAAGAAACAAATTGCGGCAAAGAATGAAGAAAGAGAGAAAGATTCTTATTCTTGTCTTAGTTGATGATATTTGGGGAGAATTAAATGCTCAAAAAATTGATTTGGAGGAACTTGGAGTCCCTTTAGGAGATGAATGCAAATTATTGATAACATCAGGAAATCTGGATTTTGTAAAAAATATGAGGGAAATAAATTCCAAGGTGTTTCAACTTGAAGTGTTGTTAGAAGATGAGGCTCTGAGCTTGTTTGATAAGATCGTTGGAAAATTTACTGACATATCGACAAGATCCTTAGTAATTGAAATTGAAATAATAAGAAGATGTGCAGGGTCAACTCTTTCAACGTTTGTTATGGCAAATGCATTAAGAGGTGCGGGTCTACCTTCTTGGCTCGATGCCTTAAATCAGCTGAAGCAAAATGTTTCACCCATAAAAATATTCCTAGATAATTTAAAAAGTGAAGAACTCAAATATTTGTTCTTGCTTCTTACTATTCGAGGAAGAAGGGCTATTCATAAAACTAGTTTATTGTTTGACACATGGACAAGCTTACTCCAGAATCTTGGAACATTAGAGACAGCAAGAAATAGGCTTGATTCATTGATTACTGATATTAAGGCATATGGCCTTGTGGTTGAAGATGGAAATGAACATGTTAAAATAGTTGACTCAATATGGGAAACTGCTTATTCAATAGCTCAAAATGAGCTAAAAGCTGAAATATTTTCCAGATTTGATTTAATAGGTTCGATTACTACTGGGCGCCTACTACCAGAAGAGCGGTTTAGAATTTTACACTTTTGTAGCATGACTGTGTTCAGTAGTTTCCAGATTCCGGAAAGATTGTCCTGTCCAGAGTTGGAGGAGATTGTGCTACGTACAGAACATCCCATAATGGTTCCAGATTCCTTTTTTGAGGATACTAAGCTTCTAAAAGTCTTAGATTTTGTTGGATTTGATTGTTCAGAGCTACCAATTAGTATTGGTTTGTTAAAGAACATTCAAGTATTATCCATGTCTAATTGTAAATTGGGAGATATAACTATATTGGGGGAGCTTGCAAACTTGCAAATGCTTAGCCTTCAAGGAAGTCATATCCAACAATTGCCTAGACAAATTGGACAGCTCCACAAGTTGCGGTTCTTAGATTTGAGAGATACATATCTCCAAGTCATTCCACCAAAAGTTCTAGCAAACTTGACAAGTTTAGAAGAACTATATTTGAGAAACTCCTTTTCTAATTGGGAGGTTGAAAGGTCCAACAATGAAAAATGTTGTGCAAGCTTGAAAGAGCTTACAAACTTGCATCACTTGACGCATATAGAAGATTTATATGTTCCTAATTACGAGGCATGGCCAGTGGACCTTTATTTTGAAAAATTAAAATCATACACAATCTTCATTGGGGATGAATGGGGTCATACCCATGATGGTGATCATGGGTTAAAGACCCTGAAACTCAAGTTGAACAGAATGTTCCAATCTGAGGAAGGGATCAAGAAGATGTTGAAAGTTGTAGATGTTTTGTACTTGGATGAATTAAATGGTGTTCAAAATGTTCTCATTGATTTGGACTGTTATGGTTATGGGTTTCCCTATCTACAGTCTCTAGTTGTACAACACAATGCTGAAATCAAATGCATAGCCAAGAGCTCGAGTCACTCTCTTGATGATGTCGATGTTTTCCCCAACTTGAAGTCATTGTTTCTTTACAATCTGAGCAATTTGGAACATATATGTCATGGTTATTTATCTCAGAAATCTTTCCTCAATTTAAGAATCATCAAAGTACACAAGTGCGATGGAATGTCGTATCTCTTCTCAAAGTCAATGATCGGAGGTTTTCCTCATCTTGTTGATATAGAAGTTTCAGAGTGCAAATGCGTAAAGGCGGTGCTTATTGAAGATGCATTGGATGTTGCCTCAAATTTTCCTGAATTATGCTATCTAACCTTACGAGGACTCTCAAAATTAATGACATTCTGCTATAGTTTTCATGACTCCACAACACTTTTTGATGGTCAGTTGTCATTAGACAAATTAAAGGTGCTTCATGCAATAAATTTGGATATTGAGCAACTATGGCATTACAATTGTCCCCCAAAATCACTATGCGAACTGGAGGATCTGACTTTGAGTGATAATAATAAACTGTTGAGTGTCATATCTGGCAGTAGGATGATCATGAGATACAACAACTTGAAAATTGTAACTGTGCATAGATGTAGATTATTAACAACTGTTTTTCACCTTGAAGATGATAGACCAAATAATCAAGCTATGGAAGCACTTTTTCATCAACTAATGGTATTAGAATTAAGAAACCTATGCAATCTGAGAGATATATGGTACAAGGAACCTAAAATTCCATTCTTCCAAAGTTTAAAATCACTTCACATTGTCCACTGTGGTAACATCAAGAGTGTATTCTCACTTTCTGCTGTTAGAAATCTGACACAACTCAAATTACTCAAGCTATATAATTGTGAGAAATTGGTTGAGGTAATAGAAGGCGATGAAGATGAAAATTTACCAATCACTTTCCCTGAAGTAGAATGTCTTATACTCAAAGATCTTCCAAACTTGGTTCGTTTTCATGGACCAAGAAACAGAACTTTTAATGGGCCTAAACTACATACAATAAGGGTGAAAAATATTCGAAGTATGGTTACATTTTGTGACGGCCATCTTAACACGCCTATGCTGAGAACTGTTTTGGTATCCTTTGTGAAGAGATGTTGGTATGGAGACTTGAACAATACCATACGTCACTTAAATGGTTATGCATCTTTCAATAATATAATTTTCTGTGAAGGTTCCCCTGATGGCTTTAGCTGTAAGGACTTACAAAATGCTTTATATGAAGTTCTTGGAAAAGGGAGTCTTGGGACAACATACAAGGCTACCCTGGATGATGGAACAAAAGTGGTAGTGAAAAAGTTGATAGATCCAAGCAAGGAGAAATGGCAGAAAGTGGTGAGTTTAGGGAGTATGGGGCGCCACCCTAATGTCATGCCTCTTCAAGCATATTATAATTCCATAGATGAGATGCTTCTTGTTTACCCCTACATGCCAAGAGGCAGCTTATTTTCCTATTTACGTGGCAATAAGGTTGGGGAAGAAACTAAATTAGATTGCCATTCAAGATTGAAGATTGCACTTGGAGCTGCCAAGGGAATTGCTTTTATTCATTCTGAGAGGGGCCTAAATTTTACACATGGCAACTTAAAGTCAACCAATGTTCTCATCACACAAAATCTTGATGATGCCTGCATTTCTGATGTTAGATTGACTTCTCAAATGAATGACTCATCATCTATTATGTCTAAAGCTAATGTCTATCGAGCTCCAGAAGTTACTGATTCCATGCAGATCACTAAGAGCTCTGAAGTTTATAGCTTCGGTGTGATTCTTCTTGAAATGATGGTAATAAAGGATGTGTATGATAAGGGTTATGATTTTCCTAGGTGGTTATTGAATTATTATATGGATTGTACGACTTATAGATTTCTTATGAGAAACCTAGATAATATATTTTATCCGGAGCTTAAGATAACACAACATAATGCACATCAAATTATAGGCATGCTTTCTATTGCATTTAAATGTACAGAAGTGTTTCCAGATAAGAGGCCTAGAATGGAAGGAGTTGTTAAAATGATTGAGGAACTCTCCTCCTCTGATAACACTATATCCAATGGAGAAAATGATTCAGATTGGACTTTAAAGTACATAAGACCCTAG 4290 0.3664 MKEKATALQLENLRRCVQDLQDKRQKVTWYLTDLQGQISWIEKVDDIDRKVIGLSSNYEGKGACTIWWCQYRLNKEMRKIEQKISQLYEEGAKYYNPKCRTEFLDEIMAALKDPHIQTVGVWGLGGGGTTSLVKQVGEQVKERGLFDAVVITTIVEEPNVEQIQKDIASVLGLEFHEEPRVERRNKLRQRMKKERKILILVLVDDIWGELNAQKIDLEELGVPLGDECKLLITSGNLDFVKNMREINSKVFQLEVLLEDEALSLFDKIVGKFTDISTRSLVIEIEIIRRCAGSTLSTFVMANALRGAGLPSWLDALNQLKQNVSPIKIFLDNLKSEELKYLFLLLTIRGRRAIHKTSLLFDTWTSLLQNLGTLETARNRLDSLITDIKAYGLVVEDGNEHVKIVDSIWETAYSIAQNELKAEIFSRFDLIGSITTGRLLPEERFRILHFCSMTVFSSFQIPERLSCPELEEIVLRTEHPIMVPDSFFEDTKLLKVLDFVGFDCSELPISIGLLKNIQVLSMSNCKLGDITILGELANLQMLSLQGSHIQQLPRQIGQLHKLRFLDLRDTYLQVIPPKVLANLTSLEELYLRNSFSNWEVERSNNEKCCASLKELTNLHHLTHIEDLYVPNYEAWPVDLYFEKLKSYTIFIGDEWGHTHDGDHGLKTLKLKLNRMFQSEEGIKKMLKVVDVLYLDELNGVQNVLIDLDCYGYGFPYLQSLVVQHNAEIKCIAKSSSHSLDDVDVFPNLKSLFLYNLSNLEHICHGYLSQKSFLNLRIIKVHKCDGMSYLFSKSMIGGFPHLVDIEVSECKCVKAVLIEDALDVASNFPELCYLTLRGLSKLMTFCYSFHDSTTLFDGQLSLDKLKVLHAINLDIEQLWHYNCPPKSLCELEDLTLSDNNKLLSVISGSRMIMRYNNLKIVTVHRCRLLTTVFHLEDDRPNNQAMEALFHQLMVLELRNLCNLRDIWYKEPKIPFFQSLKSLHIVHCGNIKSVFSLSAVRNLTQLKLLKLYNCEKLVEVIEGDEDENLPITFPEVECLILKDLPNLVRFHGPRNRTFNGPKLHTIRVKNIRSMVTFCDGHLNTPMLRTVLVSFVKRCWYGDLNNTIRHLNGYASFNNIIFCEGSPDGFSCKDLQNALYEVLGKGSLGTTYKATLDDGTKVVVKKLIDPSKEKWQKVVSLGSMGRHPNVMPLQAYYNSIDEMLLVYPYMPRGSLFSYLRGNKVGEETKLDCHSRLKIALGAAKGIAFIHSERGLNFTHGNLKSTNVLITQNLDDACISDVRLTSQMNDSSSIMSKANVYRAPEVTDSMQITKSSEVYSFGVILLEMMVIKDVYDKGYDFPRWLLNYYMDCTTYRFLMRNLDNIFYPELKITQHNAHQIIGMLSIAFKCTEVFPDKRPRMEGVVKMIEELSSSDNTISNGENDSDWTLKYIRP* 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3236 1429 SUPERFAMILY L domain-like 737 1074 - -
Lja6g3236 1429 Gene3D Ribonuclease Inhibitor 428 647 IPR032675 -
Lja6g3236 1429 PRINTS Disease resistance protein signature 193 207 - -
Lja6g3236 1429 PRINTS Disease resistance protein signature 118 133 - -
Lja6g3236 1429 PRINTS Disease resistance protein signature 503 517 - -
Lja6g3236 1429 PRINTS Disease resistance protein signature 998 1014 - -
Lja6g3236 1429 Pfam Protein kinase domain 1137 1332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3236 1429 Coils Coil 70 90 - -
Lja6g3236 1429 Gene3D Ribonuclease Inhibitor 903 1133 IPR032675 -
Lja6g3236 1429 Gene3D - 78 251 IPR027417 -
Lja6g3236 1429 Gene3D Ribonuclease Inhibitor 659 876 IPR032675 -
Lja6g3236 1429 PANTHER - 91 1008 - -
Lja6g3236 1429 Pfam Leucine rich repeat 537 592 IPR001611 GO:0005515
Lja6g3236 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 344 IPR027417 -
Lja6g3236 1429 Gene3D Phosphorylase Kinase; domain 1 1139 1206 - -
Lja6g3236 1429 Pfam NB-ARC domain 104 324 IPR002182 GO:0043531
Lja6g3236 1429 SUPERFAMILY Protein kinase-like (PK-like) 1135 1404 IPR011009 -
Lja6g3236 1429 SUPERFAMILY L domain-like 438 755 - -
Lja6g3236 1429 ProSiteProfiles Protein kinase domain profile. 1133 1406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3236 1429 Gene3D Transferase(Phosphotransferase) domain 1 1207 1425 - -
Lja6g3236 1429 PANTHER PHOSPHATASE, PUTATIVE-RELATED 91 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3236 Lja-Chr6 60772035 60776796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3236 1114 1421 Receptor kinase-like Gene Family AT5G58300 42.089 7.94e-61 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja6g3236 Pkinase 9.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3236 - - lja:Lj6g3v2218100.1 1871.29