Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3233 ATGGCTACACCTGCTCCCCCGAGGGTTCCAAATCTTATTGGGGGCAAGTTTTCTGACTCAAAATCAGCGACCTTCATCGATGTTATAAACCCTGCAACGCAAAAAGTTGTTTCCCAACTTCCTTTGACTACAGATGAAGAGTTTAAAGCTGCAGTTGCTGCAGCAAAGAAGGCGTATCCATCATGGCGTAACACTCCAATCACGAGACGCCAACGAGTTATGTTGAAGTTCCAAGAGCTTATACGCAGAGATATTGATAAACTTGCCCTGAATATTACCACTGAACAAGGGAAGACTTTAAAGGATGCACAAGGAGATGTATTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAGATGGGGGAGTATGTTTCCAATGTATCACGTGGAATTGATACTTTCAGCATTAGAGAACCACTAGGTGTTTGTGCTGGTATTTGCCCATTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCGATAGCAGTAACATGTGGCAATACCTTTATTCTAAAACCATCAGAGAAAGATCCAGGTGCTTCTATAATTCTTGCAGAATTGGCCATCGAGGCTGGTTTGCCTGAGGGTGTCCTAAATATAGTTCATGGAACTCATGATGTTGTTAATGCTATTTGTGATCATGAAGACATCAAAGCCATATCTTTTGTTGGTTCAAATATTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCGGTTGTCATGCCTGATGCGGATGTCGATGCTACCATAAATGCTTTAATTGCTGCGGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTTGGAGACTCAAAACCATGGGAAAATATACTTGTGGAGCGTGCCAAAGCCCTTAAAGTGAATGCTGGAAATGAGCCTGATGCAGACTTGGGTCCAGTCATTAGCAAACAGGCAAAGGAGCGAATACACAGATTAATTCAATCTGGGTTTGAAAAGGGTGCCAGACTAGTGCTTGATGGAAGAAATATAGTGGTACCTGGATATGAATCTGGCAATTTCATTGGCCCAACCATCTTAGCAGATGTCACTGCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGTCCAGTTCTTCTACTCATGGAGTCAGATAGTTTGGAGAAGGCCATAAACATTGTCAATGAAAACAAGTATGGAAATGGTGCTAGTATATTTACTGCTTCAGGTGTGTCTGCAAGGAAATTTCAGACAGAGATTGAGGCTGGGCAGGTGGGCATCAATGTTCCCATTCCTGTTCCTTTGCCCTTTTTCTCATTTACTGGCAACAAGGCATCATTTGCTGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTTTACACAGATTAAAACAATAACTCAGCAGTGGAAGGAATCAGCTAGTGAGAACAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTAG 1515 0.4317 MATPAPPRVPNLIGGKFSDSKSATFIDVINPATQKVVSQLPLTTDEEFKAAVAAAKKAYPSWRNTPITRRQRVMLKFQELIRRDIDKLALNITTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSRGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFILKPSEKDPGASIILAELAIEAGLPEGVLNIVHGTHDVVNAICDHEDIKAISFVGSNIAGMHIYARAAAKGKRVQSNMGAKNHAVVMPDADVDATINALIAAGFGAAGQRCMALSTVVFVGDSKPWENILVERAKALKVNAGNEPDADLGPVISKQAKERIHRLIQSGFEKGARLVLDGRNIVVPGYESGNFIGPTILADVTADMECYKEEIFGPVLLLMESDSLEKAINIVNENKYGNGASIFTASGVSARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTQIKTITQQWKESASENKINMAMPTSQKS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3233 504 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 5 504 - -
Lja6g3233 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 254 454 IPR016163 GO:0016620
Lja6g3233 504 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 5 504 IPR010061 GO:0004491
Lja6g3233 504 CDD ALDH_F6_MMSDH 9 485 IPR010061 GO:0004491
Lja6g3233 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 28 462 IPR016162 GO:0016491
Lja6g3233 504 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Lja6g3233 504 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 11 485 IPR010061 GO:0004491
Lja6g3233 504 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 279 290 IPR016160 GO:0016491
Lja6g3233 504 Pfam Aldehyde dehydrogenase family 19 481 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3233 Lja-Chr6 60747770 60754988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3233 6 469 Aldehyde Dehydrogenase Gene Family AT2G14170 82.543 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3233 K00140 - gmx:100783569 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3233 6 60747770 60754988 Lja6g3233 6 60747770 60754988 ECH