Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3225 ATGGGGAGAGGAAAGATTGCGATTCGGAGGATCGACAATTCCACTAGCCGGCAAGTAACTTTCTCCAAGAGAAGGAATGGATTGCTGAAGAAAGCTAAAGAATTGTCCATTCTTTGTGATGCTGAAGTTGGATTGATTGTGTTCTCCAGCACTGGGAAGCTTTATGAGTATGCTAGCACTAGCATGAAATCTGTTATTGAGCGCTATAACAAGCTAAAAGAGGAGCATAATCAGCTAATGAATCCAGCTTCGGAACTCAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGACAACAACTACAATACTTGCAAGAATGTCACAGGCAATTAATGGGTGAAGGACTTTCTGGTTTGGGTGTTAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGACCAAATTTTGACTGATGAGATTAAGGAGTTACACCAAAAGGGAAATCTCATTCATCAAGAAAATGCGGAACTCTATAAAAAGATGGAGCTTATCCAAAAAGAAAACGCAGAGCTACAAAAGAAGGTTTATGAAGCAAGGAGTACCAATGAAAAAGATGCAGCATCCAGTCCTTCCTGCACTATCAGAAATGGATATGATTTACAGGCTATCAGTCTCCAGCTAAGCCAGCCACAGCCTCAATTCAGTGAACCACCAGCCAAAGCAGTGAAACTGGGATTACAGCTGCAATAG 717 0.4142 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYASTSMKSVIERYNKLKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLGVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAELQKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFSEPPAKAVKLGLQLQ* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3225 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 237 - -
Lja6g3225 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja6g3225 238 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja6g3225 238 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Lja6g3225 238 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja6g3225 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja6g3225 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja6g3225 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja6g3225 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Lja6g3225 238 Coils Coil 163 190 - -
Lja6g3225 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja6g3225 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja6g3225 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja6g3225 238 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Lja6g3225 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3225 Lja-Chr6 60690006 60702589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3225 1 237 MADS-box Gene Family AT2G14210 62.762 1.63e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja6g3225 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3225 K09264 - gmx:100808145 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3979 4 72897345 72907253 Lja6g3225 6 60690006 60702589 PCT