Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3218 ATGGAGAACTATGCTCCTGCATACCCACCATCATACCCAGATTCCGGTGAATCCTCTCCACGTTCACGAGAGATCGACTTCGAAAACCCACCACCATGGGATGATCAAAACTACAAGGTCAAGTTCATGTGCAGTTACGGCGGCAAGATCCAGCCACGCACACACGATAATCAGCTTTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGATCGCAACATCAAGTTCCCTGCGCTTCTCTCCAAGCTCTCCGCTCTCTGCAACAACTGCGACAACCCCGCCGACCTCACCTTCAAGTACCAACTCCCTGGCGAGGACCTCGACGCTCTCATCTCCGTCACCAACGACGATGATCTTGATCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCTGCTAGACCTTCTCGTATGCGGCTCTTCCTCTTTCTCCCTGAGAATCCTCTTCCCTCTGCTCTCGCACCAGCACCGGTTTCCGATCAACCCGACCCGGTAAAGCCCAACAACGTCGATTTCCTCTTCGGTCTCGACAAGCCGGTTGCTGCTCCTCCTCCGCTTCAGCCACCGCCACTCGCCGCGGCTAATCCGGTGCCGCCACCTGTGGCGGTGCCCCCTCCAGAGTACCACCAGCCGCGACCAAATTCTGATCGGGTCATGGGTTCGGATCCGGGTGTAAACCATCATATCGAGATCCAGAGGCAGTTGCAGCGGTTACAGGTTGCGGAGAGCGAGCAAGGTCCGTATCGGAGGAGAAGCGAGGATAATCATAACCCCACCCCCGCCGGGAACTACGATTACTACGCTCAGAAGGCGCCGGAGAAGTTGCCAGCGTCTAATTTCCCGGTGAGCGCGCCGCCGCCGAATCAAGCTGGTTATTGGCAGCAGGAGAAGGCTGTTTCCGGCGAGGTTTATCACTCCGGAGGAGGGGACCAGCCGGTGTACATGATTCCGGGAACGGGAACGTTCTATCACGCGCCGATGGTGCGTCCGCCGGTGTCGCAAGGCTACTACGCGATGCCACGATTGCCTTCTGATGTTTACCGTGAGCAGCAACCGGTGTACGGCGGCGTTCCGCCGCCTAAAGCGCCGTACTCGTCGGCGGTGCCGGTGACTTATCCACCGGCGCAGCCAGTTAAAGCTCCCGCGTATACAGAAGGAGTCAGCGTGGTTCGACAAGCTGGGTTACCGGATAATACGGCAGGTGCGTACGCACAGGTGGCGTATGATAGTGCCACTGGGAGACATGTTTACTATACTGCCCCGGGAGGTGTTGTGCACGCTCCGCCGTACCAAGGAGTTGCTCCGCCAGGCTCCACTGATCTGAGACCACCGGGCATGTCATTGGGTCAAGATGTTAAAGTTATAAACAAGGTTTCTCAAGGTTCAGTGTGA 1398 0.5744 MENYAPAYPPSYPDSGESSPRSREIDFENPPPWDDQNYKVKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRNIKFPALLSKLSALCNNCDNPADLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFLPENPLPSALAPAPVSDQPDPVKPNNVDFLFGLDKPVAAPPPLQPPPLAAANPVPPPVAVPPPEYHQPRPNSDRVMGSDPGVNHHIEIQRQLQRLQVAESEQGPYRRRSEDNHNPTPAGNYDYYAQKAPEKLPASNFPVSAPPPNQAGYWQQEKAVSGEVYHSGGGDQPVYMIPGTGTFYHAPMVRPPVSQGYYAMPRLPSDVYREQQPVYGGVPPPKAPYSSAVPVTYPPAQPVKAPAYTEGVSVVRQAGLPDNTAGAYAQVAYDSATGRHVYYTAPGGVVHAPPYQGVAPPGSTDLRPPGMSLGQDVKVINKVSQGSV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3218 465 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 461 - -
Lja6g3218 465 MobiDBLite consensus disorder prediction 183 221 - -
Lja6g3218 465 Gene3D - 60 146 - -
Lja6g3218 465 PANTHER OS05G0427100 PROTEIN-RELATED 1 461 - -
Lja6g3218 465 SMART PB1_new 54 147 IPR000270 GO:0005515
Lja6g3218 465 Pfam PB1 domain 55 145 IPR000270 GO:0005515
Lja6g3218 465 MobiDBLite consensus disorder prediction 1 33 - -
Lja6g3218 465 MobiDBLite consensus disorder prediction 241 266 - -
Lja6g3218 465 MobiDBLite consensus disorder prediction 183 213 - -
Lja6g3218 465 SUPERFAMILY CAD & PB1 domains 55 150 - -
Lja6g3218 465 CDD PB1_UP2 43 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3218 Lja-Chr6 60636463 60638217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3218 34 145 MAP Kinase Kinase Kinase AT5G57610 46.429 3.09e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3218 - - lja:Lj0g3v0240859.1 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3973 4 72780396 72781940 Lja6g3218 6 60636463 60638217 PCT