Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3208 ATGCATATGGAGATTTCATCTTTACCTGAACAGGGGTTGATAGAGGATCCTAACTTCCTCCACCAGTGGCGCTTTGGCTCTATTGATCCCCCAAGCTTAACAGCTTCCGCTGCTTTTGGAGAGGCTTTGCAAAAACATTCATTCACTAATAATAGCCCAAACTTCAACCACAAAACTTCTACTGATACACAATATGCTTCCTGCCAAAATCTGATTTCATTTGCTGATTCAAGTCATCACATGAATCAATTGGGACTAGTGAGGCCTAAAGAGGAGATGGAGAGTCCTAAAATTGATAACACTGCTCTCGCAAACATGTTGATCTCTCAAGGAGCCTTCATGAATCAAAACTATGCCTTCAAAGCTTGCCAGGAGGATAAAAAGATTGGGGCATGTCATAAACTTTCTCAACCTCATCATGAGCATGTAATTGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGAGGTTCATTGCTCTGTCAGCTCTTGTTCCGGGCCTGAAAAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATCAAGTACTTGAAGCAAATGCAAGAAAAGGTGAGTGCTCTAGAGGAGGAGCAGAAGCGGAAGAAAACTGTGGAATCTGTGGTGATTCTGAAGAAATCTCTATGTAATGATGCTGAAGACACTTCTTCAGACAATGGTGGTGAATTTGATGACACACTGCCTGAAATTGAAGCACGATTCTGTGAAAGAAATGTCCTCATAAGGCTGCACTGTCTGAAGAATAAAGGAATTATAGAGAAAACAATCAGTGAGATTGAGAAGTTCCATTTAAAAGTTATCAATAGCAGTGCCTTGACATTTGGGAGCTTTGCCCTTGATATTACCATTATTGCTCAGATGGATATGGGATTTTGCATGACAGGAAAGGATCTTGTGAGAAACCTACGTTCAGCTCTATCATCTCTCATGTGA 948 0.4167 MHMEISSLPEQGLIEDPNFLHQWRFGSIDPPSLTASAAFGEALQKHSFTNNSPNFNHKTSTDTQYASCQNLISFADSSHHMNQLGLVRPKEEMESPKIDNTALANMLISQGAFMNQNYAFKACQEDKKIGACHKLSQPHHEHVIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQKRKKTVESVVILKKSLCNDAEDTSSDNGGEFDDTLPEIEARFCERNVLIRLHCLKNKGIIEKTISEIEKFHLKVINSSALTFGSFALDITIIAQMDMGFCMTGKDLVRNLRSALSSLM* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3208 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 200 IPR036638 GO:0046983
Lja6g3208 315 CDD bHLH_AtNAI1_like 141 212 - -
Lja6g3208 315 PANTHER BHLH TRANSCRIPTION FACTOR 61 314 - -
Lja6g3208 315 PANTHER BHLH TRANSCRIPTION FACTOR 5 63 - -
Lja6g3208 315 Gene3D - 136 210 IPR036638 GO:0046983
Lja6g3208 315 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 61 314 - -
Lja6g3208 315 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 5 63 - -
Lja6g3208 315 Coils Coil 176 203 - -
Lja6g3208 315 Pfam Helix-loop-helix DNA-binding domain 141 187 IPR011598 GO:0046983
Lja6g3208 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Lja6g3208 315 SMART finulus 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3208 Lja-Chr6 60483482 60486123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3208 141 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.307 1.45e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g3208 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3208 - - gmx:100790824 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3208 6 60483482 60486123 Lja6g3208 6 60483482 60486123 ECH
Lja4g3963 4 72637328 72639877 Lja6g3208 6 60483482 60486123 PCT