Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3197 ATGAGCTTTGACAACAAAAGTGGACTCTGTGGAGGAATACTAGGAAGCTGTGATGATGAGAGTCTATTTGACAGATCATTTTGGTATAGTTTTATTATTGGTGTTGTTTTTGCAGCAGCTTCTTTCATGTATTACTGTGCACCCTGGACAGAATTCCAGAAGAGGAGGAGTAATGTTATATACCCCTTAAGAAAGAAGCAGAACCATCAAAAGTACACTAGAAAAGTAGCTGAATTGCTACCTCTGGCCTTGCAAGAGAAAAGAAGCAAAGAGCTTTCAAGAATGTTGGAGAGATTGATTCCCAGAATGGGATTCACAGAACTATGCAAGGCAACTGATTACTTTAGCCAAGACAACATATTGGGGCTAGGAACAACAGGGATTATGTACAAGGCCAAGGTACCTAATAACACTTTTCTAGCAGTTAAGAGACTATATGATGCTGATAAGTACAAGAGGGACTTCGTGCTTGAGACAATGATTCCGGGGAGACACAGTCACAGAAACATAGCTTCTCTGCTTGGATTCTGCATAGAGAAAAATGAAAGGATTTTGGTTTATAATTACATGTCAAATGGTAGACTCAGTGATTGGTTACTACATTCTGATGAAGGACATCAAACTCTGATATTGGGATGGCCTGAGAGGATTCACATTGCACTTGGGCTAGCAAGAGCTTTGTCCTGGCTCCATAAAAAGTGCAAGATAGTCCATCTCAATCTAGGTTCAGAGTGTGTCTTGCTGGACAATAATTTTGAACCGAAAATTTCTAATTTTGGTAAAGCCAAATTCATAAACCAAATGCTTGAAGATCATGTAAGGATGAGACTGGTTTTGATTGAGAAGGATGTGTATGACTTTGGTATTATCCTTTTTGAGCTTATAACAGGGAGAAGATTATGTCCATGGACTGATTCTTGTGACAGAGTAGATGGCTCTTTGATGAACTATATTAGCAATAAATTGTTCACTGATTCTATGGATTTTTCTGATGTCGTTGATAAATCTATCACTGGTAAAGGTTTTGATCATAAAATCCTTCATCTCCTAGAAGTTGCATGTGATTGTGTTAAGCCTTCCATAGAGCAAAGGCCAAAGATGGTTGATATCTACAAAACTATAAGTGCCATGTGGGAGGGCTATAGGCCCTGGTTTGATTCTGAAAGGCTGAAACTATCTATGGTTTGCCCTGATCAGATGATATGTGGCAATGAAATAGAATGTATTTGTTGA 1233 0.3861 MSFDNKSGLCGGILGSCDDESLFDRSFWYSFIIGVVFAAASFMYYCAPWTEFQKRRSNVIYPLRKKQNHQKYTRKVAELLPLALQEKRSKELSRMLERLIPRMGFTELCKATDYFSQDNILGLGTTGIMYKAKVPNNTFLAVKRLYDADKYKRDFVLETMIPGRHSHRNIASLLGFCIEKNERILVYNYMSNGRLSDWLLHSDEGHQTLILGWPERIHIALGLARALSWLHKKCKIVHLNLGSECVLLDNNFEPKISNFGKAKFINQMLEDHVRMRLVLIEKDVYDFGIILFELITGRRLCPWTDSCDRVDGSLMNYISNKLFTDSMDFSDVVDKSITGKGFDHKILHLLEVACDCVKPSIEQRPKMVDIYKTISAMWEGYRPWFDSERLKLSMVCPDQMICGNEIECIC* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3197 410 PANTHER RECEPTOR-LIKE PROTEIN 55 21 382 - -
Lja6g3197 410 ProSiteProfiles Protein kinase domain profile. 115 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3197 410 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lja6g3197 410 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 21 382 - -
Lja6g3197 410 Gene3D Phosphorylase Kinase; domain 1 76 189 - -
Lja6g3197 410 Gene3D Transferase(Phosphotransferase) domain 1 190 382 - -
Lja6g3197 410 Pfam Protein tyrosine and serine/threonine kinase 118 372 IPR001245 GO:0004672|GO:0006468
Lja6g3197 410 SUPERFAMILY Protein kinase-like (PK-like) 92 373 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3197 Lja-Chr6 60406398 60407952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3197 3 377 Receptor kinase-like Gene Family AT1G27190 29.873 1.51e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja6g3197 PK_Tyr_Ser-Thr 1.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3197 - - gmx:106795644 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3948 4 72472500 72481068 Lja6g3197 6 60406398 60407952 PCT