Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3193 ATGGACAACTGCAATTGGATGTTGGATTATGGTGGTTATTTAGAGCTTGACCCTCCCAATTTCTCATGGCCCTCTTCTTCTCCTCCCACTCTCAGTGTGGAACTAGATGACACCTATGGAAATTCAGATGCTTTCAAGGAAAGTGGCTCGAGAAAACGCTCAAGGTCAGGATCCTGCAACCTATCTGGTTCCAAAGCATGCAGAGAGAAAATGCGAAGGGATCAGCTAAATGACAGATTTTTAGAACTAAGTTCTATCCTAGACCCTGGAAGGCCTTCCAAAATGGACAAGATGGGTATATTGAGTGATGCCGTTCGAGTAGTGAGTCAGTTACGAGAGGATGCTCAGAAGCTAAGAGAGTCCACAGAGAATCTACAGGGGAAAATCAATGAATTGAAGGCCGAGAAAAATGAGCTTCGTGATGAGAAGCAGCAATTAAGAGCAGAGAAAGATATCATTGAGCAGAAGCTTAAAGCCATAAGTTCACAACCTAGCTTCCTACCCCACCACTCCACCCTCCCAACTGCATTTCCTGCCCCTCGACACGTTGTTGGTAGCAAGCTGATGCCTATTATAGGCTATCCAGGAGTTTCAATGTGGCAATTTTTACCATCTGCTGCTGTTGATACCTCTCAGGATCATGTACTCCGGCCCCCAGTTGCATAA 666 0.455 MDNCNWMLDYGGYLELDPPNFSWPSSSPPTLSVELDDTYGNSDAFKESGSRKRSRSGSCNLSGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPSFLPHHSTLPTAFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3193 221 MobiDBLite consensus disorder prediction 24 66 - -
Lja6g3193 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 139 IPR036638 GO:0046983
Lja6g3193 221 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 14 221 - -
Lja6g3193 221 PANTHER BHLH TRANSCRIPTION FACTOR 14 221 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lja6g3193 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 111 IPR011598 GO:0046983
Lja6g3193 221 Gene3D - 64 140 IPR036638 GO:0046983
Lja6g3193 221 Pfam Helix-loop-helix DNA-binding domain 64 111 IPR011598 GO:0046983
Lja6g3193 221 CDD bHLH_AtILR3_like 65 140 - -
Lja6g3193 221 Coils Coil 101 163 - -
Lja6g3193 221 SMART finulus 66 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3193 Lja-Chr6 60368395 60370103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3193 2 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.411 1.36e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g3193 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3193 - - cit:102621154 282.722