Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3185 ATGCTTGAGACTTGTGTTTCTCTGATGAGGACTCTTAGGTGCAAAGCAAACCCAAAACAAGTTCATGATCCAAAGACAAGTAGTAGGAGTAATCAGAAACCACACTCAGGTTCAGGTACACTTGAGCAGCACTCAAATATCGAAGCTTTCATCCAAGAAAGCAAGAGGAACTTAAGAAAATCATCAAGTTTCAATCCCAAAAACCATGAAACTGTTCTTGATGGCTCAAACAGTGACACTTGTCGTTGTTGTACTCCTTGTCCTCAAAGCAACAGTGGCAGCATCAAAGATTCAGAAGGTTCTTCTCATAGAACAAGAAGGACAGCACCAACAACTACAAGTATGTTGGATCAGACAGATTCTTCTGATGTTGTTTCAATGTTGATATGTCAGAAATGTGGTGAGAAACTGAAAAATCTTGATGCTGTTGAACCACACCATATCTCCAACCATTCAGTCACTGAACTTCAAGAAGACTCATCTAGGCAGATTATAGAAACAATATGTGGAACAAGTTCAGTTAATTCTGAAAACATTTTGGGGCAGATTGATTCCATCTTAAAAGTCCAGAACATGCCAAAGACACTTGCTTGCTTTGAGGAATACAGGGAAAAGGTGAAGATTAAGGCTGAAAAGCTACAAAAGAATCACCCTCGTTGCTTAGTTGATGGAAATGAACTTTTAAGGTTCCATGGAACAAACATTGCATGTTCTCTAGGCACAAACAGTTCTTATAGCCTCTGCACGTTAGACCATTGTGGTGCATGTCAAATTCTGAGGCATGGCTTCTCCACCAACAAGGAATTCCAATGTGCATTAGGGGTTTACACCACTTCCACAAGTGCAAAAGCATTTGATTCCATTGTGCTATCTAATGAGAGACAATTTGAAAGAAAGACAGTTATTGTGTGCAGAGTGATAGCTGGGATAGTTTATTCTCCTCATACTCAAGAAAAGGTTGATCATTCAGAGTTTGATTCATTGGCAGAAAAAATAAGTAATCATTCAGATTTTGAGGAACTCTATGTATTGAGTCCCAGAGCTTTGCTTCCTTGCTTTGTGGTAATCTACAAGCCACAAACAGTGGAAATTAAAAGGCTCAACTCAAGCTTAAGGATAAGTAGCTAG 1128 0.3918 MLETCVSLMRTLRCKANPKQVHDPKTSSRSNQKPHSGSGTLEQHSNIEAFIQESKRNLRKSSSFNPKNHETVLDGSNSDTCRCCTPCPQSNSGSIKDSEGSSHRTRRTAPTTTSMLDQTDSSDVVSMLICQKCGEKLKNLDAVEPHHISNHSVTELQEDSSRQIIETICGTSSVNSENILGQIDSILKVQNMPKTLACFEEYREKVKIKAEKLQKNHPRCLVDGNELLRFHGTNIACSLGTNSSYSLCTLDHCGACQILRHGFSTNKEFQCALGVYTTSTSAKAFDSIVLSNERQFERKTVIVCRVIAGIVYSPHTQEKVDHSEFDSLAEKISNHSDFEELYVLSPRALLPCFVVIYKPQTVEIKRLNSSLRISS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3185 375 MobiDBLite consensus disorder prediction 57 118 - -
Lja6g3185 375 Gene3D - 128 361 - -
Lja6g3185 375 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 359 - -
Lja6g3185 375 Coils Coil 196 216 - -
Lja6g3185 375 MobiDBLite consensus disorder prediction 57 98 - -
Lja6g3185 375 SUPERFAMILY ADP-ribosylation 180 359 - -
Lja6g3185 375 MobiDBLite consensus disorder prediction 16 44 - -
Lja6g3185 375 ProSitePatterns Zinc finger C2H2 type domain signature. 130 151 IPR013087 -
Lja6g3185 375 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 359 - -
Lja6g3185 375 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3185 Lja-Chr6 60330709 60332758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3185 130 359 C2H2 Transcription Factor Family AT5G54630 56.612 1.61e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3185 - - gmx:100792577 450.284