Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3176 ATGGCTGAGGAGTTTCAAGCTGGGATATGTGGTGAAACATGGTGGAATATGAATCCAACAAGAAGCGCGTTCCCTCTCATGAGTCCATCATCAACTTGTTCTGTTGCAGCTAATGATGCAGGGAACTACAGCACTTGGCAAACAGACTTTCTTGATTTGAGAGCAACAAGGCCTTGTGTTGCTGAAGAAACTAACAATAACAACATGGTTTCTGATGTTTCTCTGGGTTTCCTAGATGCTCAGAAGCCACAGCAGAGTGAATCAGCCAATGGAACTAGTAGCTTCTTGATTGATTCCACTTTACAAATCATGGGGTTTGGCCTCTCATCTCCAACTTCATCCAATTGGAATAACCAGTCTCTCTTTCATTGTAGTGGAAGGCCACAGAGCATGGAAGAAACTGGTTTAGATTCTTCTGGTCATCATAATCCACAAGTTTCCTCTGTTGATGCTAATTTCAAGGCAATGAACCAAGATTTTGGCTTAGATCAGCAGGGTCTGAATTCTGTAATTACCAGCAGTGGTAATTTATCAGGTGGTTTAATCCCAATTAATGGATCAGGTTCCTATGGTTACCCTTCAAATTTGGTACAAAGCCTATATGATTCTCAACCACAACCTCAGAACTCATCACTTTTCACCAACCCCTCTATGTCCTTTTCATCTTCCAATGAGCTGTCACCAACATTCTCTTCCATTCTGAAACCTGCAATGCCAAAACAACAGCTTAGTGGATTGCACTTTTCCAATAGCACCCCTTTTTGGAATGCTTCAGCTGAGGCACTTCATGACATAAGAGCAGGAGTTTTTGCTTCATCACAAACTCAATACCAAACGCCAAGTTTTGAAGAGAAGAAACAAAATCCACCTAGCGCTCTATTAAACAAGCTCAAGCGAGAAGAATCTCCAGATGCAGCGAAGAAGAGTACTTCTACTGAGCCTGCACTAAAAAGGCCAAGAATTGAGACTCCATCTCCATTGCCAACTTTTAAGTTTATATGTATGGACTTTCAGGTTCGGAAAGAGAAGCTGGGGGACCGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGACTACATCAAGTTCCTTCATGATCAAGTCAATGTATTGAGCACACCATATATGAAAAGTGGAGCTCCCATTCAAAACCAGCAGGGTACTTGTGATAATGTGAAGGAGTCATCAGAAGAAGATTTAAGAAGGAGAGGGCTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACAAATGAGACCACTGTTGATTTCTGGACACCAACATTTGGAGGCCCACCCATGGGTATGGGTAGGTAG 1356 0.4263 MAEEFQAGICGETWWNMNPTRSAFPLMSPSSTCSVAANDAGNYSTWQTDFLDLRATRPCVAEETNNNNMVSDVSLGFLDAQKPQQSESANGTSSFLIDSTLQIMGFGLSSPTSSNWNNQSLFHCSGRPQSMEETGLDSSGHHNPQVSSVDANFKAMNQDFGLDQQGLNSVITSSGNLSGGLIPINGSGSYGYPSNLVQSLYDSQPQPQNSSLFTNPSMSFSSSNELSPTFSSILKPAMPKQQLSGLHFSNSTPFWNASAEALHDIRAGVFASSQTQYQTPSFEEKKQNPPSALLNKLKREESPDAAKKSTSTEPALKRPRIETPSPLPTFKFICMDFQVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVNVLSTPYMKSGAPIQNQQGTCDNVKESSEEDLRRRGLCLVPISSTFPVTNETTVDFWTPTFGGPPMGMGR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3176 451 CDD bHLH_AtbHLH_like 337 385 IPR045239 -
Lja6g3176 451 PANTHER TRANSCRIPTION FACTOR BHLH123 84 437 - -
Lja6g3176 451 MobiDBLite consensus disorder prediction 296 321 - -
Lja6g3176 451 Gene3D - 338 399 IPR036638 GO:0046983
Lja6g3176 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 391 IPR036638 GO:0046983
Lja6g3176 451 MobiDBLite consensus disorder prediction 119 147 - -
Lja6g3176 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 437 - -
Lja6g3176 451 MobiDBLite consensus disorder prediction 297 315 - -
Lja6g3176 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3176 Lja-Chr6 60271488 60274662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3176 1 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.909 4.74e-71 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3176 - - gmx:100794682 559.296