Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3175 ATGGTGAAAACAGAGTTCATCCTATTAATTCTTGCTACTTGCTTCTATTTGACACCCTTGTTTCCCATTTTCTTGAAAGCAGAAGATAGCATAACTCCACCACAAACCATCAGTGGCAACAAGACACTAGTTTCCCCTACTCAAAATTTTGAGCTGGGTTTCTTCAGTCCAGGCAATTCCACTAATAGATATCTTGGAATATGGTACAAGAACATTCCAAAGCAAACTGTTGTTTGGGTTGCAAATAGAGACAAGCCATTAGTTGGTTCTGGTGGCTCCTTAACATTCAGCAATGATGGGAAGCTCATCCTTCTAAGCCACATAGGAAATGTTGTATGGTCCTCAAATTCTTCTGCTTCACCTGCAAGTAATCCAGTAGCACAGCTCCTAGACTCTGGAAACTTTGTCTTGAAGGATTTTGAAGATGGATTTGAGGGAATTTTGTGGCAGAGTTTTGATTATCCATCTGACACATTGCTACCAGGAATGAAGCTTGGTTGTAACTTCAAAACTGGCTTGAACATACATTTAACTTCTTGGAAAAACAGTGCTGATCCTTCTTCAGGAGAATTCACCTACAGTGTGGATCCCCGTGGCCTTCCTCAGCTTTTTCTTCATAAGGGAAACAAGAAGGTCTTCAGAAGTGGACCATGGTATGGGCAACAATTCAAAGGTAATCCAGTTCTCAGGGAAAATCCAGTTTTCAAACCCATCTTTGTGTTTGATTCGGATGAAGTGTCTTACTCATATGAGACTAAAGCTAGCATCATCTCAAGATTTGTGCTTAGTCCATCTGGTTTGATTCAGCATTTCTCGTGGAATGATCATCGGTCTACTTGGTTCTCTGAATTCAATATTCAAGGGGACCGTTGTGATGATTATGGCCTTTGCGGTGCTTATGGTGCTTGCAACATCAATAGCTCCCCGATTTGCGAGTGTTTGAAAGGTTTTGAGCCTAGGGTTTCAGGTGGATGTGTTAGGAAGAATGCACAGGTTTGCCGAAATGATGATGCATTTAAGCTTTTTGAAGGAATGAAACTACCAGATTCTGAAGAGTTTCTTACAAATTATAGCATCAGCATTGATCACTGTGAAGCAGAATGCTTGAAGAATTGCTCTTGTGTAGCTTATGCTAAACTAGATATCAATGCAAGCGGCAAAGGCTGTATTGCTTGGTTTGGGGATTTGTTCGATCTGAAACAGGTTTCTGTGAATGGGCAAGATTTCTATGTGAGAGTTCTGGCTTCAGAACAAGATTCAAGTGTTGATAAAGAGAGAAGGAATAAACTCTTACTGCTTCCTCTGGCTATATCAGTATCGATTTTCTCGACTATTATTGTCTCCGCATTATGGTTCATAATTAAGAATTGGAGAAAAAATGGAGCCAAAGAGGCAAATATTCAATTTAGTGTTGGAAGAGCTAGGAGCAAGAGGAATGAGTTTGAACTTCCAGTATTTGAGATTGCCATTATTGAAGCAGCTACAAGGCATTTCTCTGTTTACAATAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGTCAACTTCCATCAGGACAGGAAATAGCGGTGAAAAGGCTTTCAGAAAGTTCTGGACAAGGCCTGCAGGAGTTCAAGAATGAGGTTGTTTTGATCTCCCAACTTCACCATAGAAACCTTGTCAAGCTTCTGGGTTGTTGCATTCAGGGAGAAGATAAAATGTTGGTCTATGAGTACATGCCAAACAGAAGCTTGGACTCCTTCTTATTTGATGAAACCAAGCGTTCTGTGCTTAGTTGGCAAAAGAGGAAAGACATTATAATTGGCATTGCTCGCGGAATTCTGTACCTTCACAGAGATTCAAGACTAAGAGTAGTCCATAGAGACCTGAAAGCAAGCAATGTTCTCTTGGACAGTGAAATGAACCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGACAGTAGTAGGAACCTATGGATACATGCCCCCAGAGTATGCAATGGATGGCCGCTTCTCTTTCAAATCTGATGTTTTTAGCTTTGGAGTTTTACTCTTGGAGGTGTTGAGTGGCAAGAAAAACAAAGGATTTCTTCACCCAGATCACAAATTGAATCTCCTAGGCCATGGATGGAAGCTTTGGAATGAAAGAAGGGCTTTGGAGCTGATGGATCCAATGGTTGAGAATGAGGTCCCTTCCTCTGAAGCTCTAAGGTGTATTCAAGTGGGCCTTTTATGTGTTCAACAGCATCCAGAAGATAGGCCAACAATGTCATCAGTGTTGTTGATGTTGGACAGTGAGAGTGTGTTGCTTCCCCAACCTAGAAGGCCAGGATTATATTCTGAGAGATTTTTCTTAGAGACAGATTCATCATCACGTGATAGACTGAATTCTGCTTCCAATGACATAACTGCTACCATAGAAGAGGGTCGTTAG 2451 0.4104 MVKTEFILLILATCFYLTPLFPIFLKAEDSITPPQTISGNKTLVSPTQNFELGFFSPGNSTNRYLGIWYKNIPKQTVVWVANRDKPLVGSGGSLTFSNDGKLILLSHIGNVVWSSNSSASPASNPVAQLLDSGNFVLKDFEDGFEGILWQSFDYPSDTLLPGMKLGCNFKTGLNIHLTSWKNSADPSSGEFTYSVDPRGLPQLFLHKGNKKVFRSGPWYGQQFKGNPVLRENPVFKPIFVFDSDEVSYSYETKASIISRFVLSPSGLIQHFSWNDHRSTWFSEFNIQGDRCDDYGLCGAYGACNINSSPICECLKGFEPRVSGGCVRKNAQVCRNDDAFKLFEGMKLPDSEEFLTNYSISIDHCEAECLKNCSCVAYAKLDINASGKGCIAWFGDLFDLKQVSVNGQDFYVRVLASEQDSSVDKERRNKLLLLPLAISVSIFSTIIVSALWFIIKNWRKNGAKEANIQFSVGRARSKRNEFELPVFEIAIIEAATRHFSVYNKIGEGGFGPVYKGQLPSGQEIAVKRLSESSGQGLQEFKNEVVLISQLHHRNLVKLLGCCIQGEDKMLVYEYMPNRSLDSFLFDETKRSVLSWQKRKDIIIGIARGILYLHRDSRLRVVHRDLKASNVLLDSEMNPKISDFGMARMFGGDQTEAKTKTVVGTYGYMPPEYAMDGRFSFKSDVFSFGVLLLEVLSGKKNKGFLHPDHKLNLLGHGWKLWNERRALELMDPMVENEVPSSEALRCIQVGLLCVQQHPEDRPTMSSVLLMLDSESVLLPQPRRPGLYSERFFLETDSSSRDRLNSASNDITATIEEGR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3175 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Lja6g3175 816 ProSiteProfiles PAN/Apple domain profile. 333 414 IPR003609 -
Lja6g3175 816 Gene3D Phosphorylase Kinase; domain 1 461 573 - -
Lja6g3175 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Lja6g3175 816 Pfam PAN-like domain 333 399 IPR003609 -
Lja6g3175 816 Pfam D-mannose binding lectin 76 181 IPR001480 -
Lja6g3175 816 Gene3D - 23 152 IPR036426 -
Lja6g3175 816 SMART ntp_6 334 413 IPR003609 -
Lja6g3175 816 Pfam Protein tyrosine and serine/threonine kinase 500 766 IPR001245 GO:0004672|GO:0006468
Lja6g3175 816 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 19 813 - -
Lja6g3175 816 Gene3D Hepatocyte Growth Factor 330 415 - -
Lja6g3175 816 SMART blect_4 34 155 IPR001480 -
Lja6g3175 816 Gene3D Transferase(Phosphotransferase) domain 1 574 775 - -
Lja6g3175 816 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Lja6g3175 816 SMART serkin_6 498 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3175 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 186 IPR036426 -
Lja6g3175 816 SUPERFAMILY Protein kinase-like (PK-like) 482 786 IPR011009 -
Lja6g3175 816 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Lja6g3175 816 CDD PAN_AP_plant 334 413 - -
Lja6g3175 816 CDD STKc_IRAK 504 770 - -
Lja6g3175 816 CDD B_lectin 35 155 IPR001480 -
Lja6g3175 816 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3175 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3175 Lja-Chr6 60265624 60269490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3175 430 811 Receptor kinase-like Gene Family AT4G05200 50.914 5.57e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3175 PK_Tyr_Ser-Thr 5.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3175 - - gmx:100804024 1335.47