Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3174 ATGAAAGGTTCTACAACTTCATTGTTTTGGTTCTTCTTCACTTTAGCTTTGTTTTCCAATACAGTTGTGCTCTCAGTGGATACCTTAACTGCAACCCAATCCCTTGGACTTAACCAAACACTTGTATCTCCAGAGGAAGTGTTTGAGCTTGGTTTCTTTAGCACAAACGGTTCGAAATGGTACTTGGGTATATGGTACAAGGACTTTCCTTTCAAAACTGTGGTTTGGGTGGCAAATAGAGACACCCCACTTGAAAATTCCAATGGAACTCTCAGGATTGGAGAAGAAGGAAACCTTGTTCTTCTTAATCAAACAGGTTACACCATATGGTCATCAAATCAAACCACTGCTACAAACCCAGTTCTTCAGCTTTTGGATAGTGGGAACTTGATTCTAATAGAAGCAAACGAGAGAAACACCACAAACTATCTATGGCAGAGCTTTGATCACCCCACAGATACTTTGTTGCCAGGCATGAAGCTTGGTTGGGACCTTGACACCGGCGTGGAGCGCCGGATAACAGCATGGAAAAGCCAAGATGATCCATCAAGCGGAGACAGTTACTTCAGTGTAGATTATCATGGGATACCAGATGTTTTCTTATGGAACAAACAACAAAGGATCTTTAGAACTGGACCTTGGAATGGTGAGAGGTTAGGTGGAATACCAATACTAGACACCATAGCTGATCTCAATGATACAGTGCATGCTGATGAACATGGAGTGTATTTCATCATTTCACCACTTGCACAATCTAATCTGTCCAGAATGGTTGTGAACTGGACCGGCGCAATTGAACGCTGTGCTTGGGTAGAGAGCAGCCAAAGTTGGACAAGAACATGGTTTGCACCTAATGGAGATTGTGATCAATATGGAGTGTGTGGTCCTTTTGGTATCTGTGACTCAAATGCTTTCCCTGTATGCCAGTGTATTCAAGGGTTCAGTGTCAAGAATCAGCAGCAATGGGATTTGAGAAACTTCTCTGATGGGTGTGTGAGAAAGACAGGACTGGAATGTGGGAAAGACAAGTTTTTACCCATGAAGAATGTGCAGTTGCCTGATACCAGAGAGGCATTTGTAGACAAGAACATGACCCTATTGGATTGTGAAAGTAGGTGCCAGAGGGAATGTAATTGCACTGCCTATGCTAATGCAGAGATTACTAATGGAGGGACCGGTTGCGTGATGTGGACCGGTAATCTCATAGACACCAGACAGTTTGTAGAAGGTGACCAAGATCTTTATGTCAGATTAGCAGCTTCTGATGTAGATGACAGTGATACAGGATCTTCTGGTGGCTCTGACAATAAAAAGAATGTAGGAGTTATTGTAGGAATTGCAGTTCCGGTAGCTCTAGTAGTTTTGGCGGTGATTATATTCATATTGTGGAAGAAGGTAAAATTGAGGAGTATATCTAAAGGGAACGAGCAACAGAATGATAATTCTAATAGAAGTCAGACGACGTTGTTACGTGATGCAAGATTTTCAAATAACAAAGAACATGCAGATGAAAGGAGCATGTACAAGCTAGACTTGTCATTGTTTGATTTTCAGACCATATCAGAGGCTACAAACTTCTTTTCTTTAGCAAATAAACTTGGTGAAGGAGGCTTTGGAAGTGTTTACGGGGGTAGGCTAGCGGGTGGCCAACATATCGCTGTGAAAAGGTTATCAACCGGCTCGGGGCAAGGAAATGAAGAATTCACGAATGAGGTAAGTTCAATTGCAAAGGTTCAACATAGAAATCTTGTACGACTGCTTGGCTGCTGCATTGAGAAGGATGAGAAGATGCTGATCTATGAGTACATGGAAAATAAAGGCCTAGATTCTATTTTGTTTGACAAAGTAAAGAGTTCCATGCTAGACTGGCCAATGCGCTTCAACATTATATGTGGAATAGCTAAAGGGCTCCTTTACCTCCATCATGACTCAAGATTTAAAATTATCCACAGGGATCTCAAGGCAAGCAATGTTCTACTTGACAAAGAAATGAACCCAAAGATATCAGATTTTGGGATTGCCCGAATCTTTGACAATGATCAAACACAAGCGAATACAAGGAGAGTAGTTGGAACATATGGCTACATGTCTCCTGAGTATGCAATGGGTGGATACTTTTCAGTAAAATCGGATGTTTTCAGTTTCGGAGTTCTAGTGTTAGAGATCATAAGTGGGAAGAAGAACATAGGATTTTATTCCTCAGATGACATAAATCTTCTTGGACATGCATGGAGGCTCTGGAAAGAAGGAAGTGCATTGGAACTAATAGATTCATCATTTTCTGAATCATGTTCACAATCAGAAGTGCTAAGATGCATACACATTGGCCTCATATGTGTCCAAGAACGAGCAGAAGACAGACCTGCAATGTCTTCTGTGGTCTTGATGTTGAGTAATGAAGCTGCCTTGATGCCAGAACCTAAACACCCTGGTTTTGTCTTTGGAAGGAGCCCCGGTGAGACTAATTCTTCTTCTGCTAGGCAAGAAGAATCATACACCATAAACCAGGTCACGGTTACAAGACTAGATGGCAGGTAG 2538 0.418 MKGSTTSLFWFFFTLALFSNTVVLSVDTLTATQSLGLNQTLVSPEEVFELGFFSTNGSKWYLGIWYKDFPFKTVVWVANRDTPLENSNGTLRIGEEGNLVLLNQTGYTIWSSNQTTATNPVLQLLDSGNLILIEANERNTTNYLWQSFDHPTDTLLPGMKLGWDLDTGVERRITAWKSQDDPSSGDSYFSVDYHGIPDVFLWNKQQRIFRTGPWNGERLGGIPILDTIADLNDTVHADEHGVYFIISPLAQSNLSRMVVNWTGAIERCAWVESSQSWTRTWFAPNGDCDQYGVCGPFGICDSNAFPVCQCIQGFSVKNQQQWDLRNFSDGCVRKTGLECGKDKFLPMKNVQLPDTREAFVDKNMTLLDCESRCQRECNCTAYANAEITNGGTGCVMWTGNLIDTRQFVEGDQDLYVRLAASDVDDSDTGSSGGSDNKKNVGVIVGIAVPVALVVLAVIIFILWKKVKLRSISKGNEQQNDNSNRSQTTLLRDARFSNNKEHADERSMYKLDLSLFDFQTISEATNFFSLANKLGEGGFGSVYGGRLAGGQHIAVKRLSTGSGQGNEEFTNEVSSIAKVQHRNLVRLLGCCIEKDEKMLIYEYMENKGLDSILFDKVKSSMLDWPMRFNIICGIAKGLLYLHHDSRFKIIHRDLKASNVLLDKEMNPKISDFGIARIFDNDQTQANTRRVVGTYGYMSPEYAMGGYFSVKSDVFSFGVLVLEIISGKKNIGFYSSDDINLLGHAWRLWKEGSALELIDSSFSESCSQSEVLRCIHIGLICVQERAEDRPAMSSVVLMLSNEAALMPEPKHPGFVFGRSPGETNSSSARQEESYTINQVTVTRLDGR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3174 845 SUPERFAMILY Protein kinase-like (PK-like) 513 823 IPR011009 -
Lja6g3174 845 Gene3D Transferase(Phosphotransferase) domain 1 603 805 - -
Lja6g3174 845 Pfam D-mannose binding lectin 73 177 IPR001480 -
Lja6g3174 845 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Lja6g3174 845 PIRSF SRK 2 845 IPR024171 GO:0004674
Lja6g3174 845 ProSiteProfiles Bulb-type lectin domain profile. 26 145 IPR001480 -
Lja6g3174 845 SMART ntp_6 339 418 IPR003609 -
Lja6g3174 845 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Lja6g3174 845 SMART blect_4 32 151 IPR001480 -
Lja6g3174 845 CDD STKc_IRAK 533 797 - -
Lja6g3174 845 CDD PAN_AP_plant 337 419 - -
Lja6g3174 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 844 - -
Lja6g3174 845 Pfam PAN-like domain 339 404 IPR003609 -
Lja6g3174 845 Gene3D - 21 149 IPR036426 -
Lja6g3174 845 Pfam Domain of unknown function (DUF3403) 799 845 IPR021820 GO:0004674
Lja6g3174 845 Gene3D Phosphorylase Kinase; domain 1 488 602 - -
Lja6g3174 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Lja6g3174 845 CDD B_lectin 32 151 IPR001480 -
Lja6g3174 845 Pfam Protein tyrosine and serine/threonine kinase 529 795 IPR001245 GO:0004672|GO:0006468
Lja6g3174 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 182 IPR036426 -
Lja6g3174 845 PANTHER - 14 844 - -
Lja6g3174 845 ProSiteProfiles PAN/Apple domain profile. 339 419 IPR003609 -
Lja6g3174 845 SMART serkin_6 527 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3174 845 ProSiteProfiles Protein kinase domain profile. 527 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3174 Lja-Chr6 60260690 60264274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3174 431 833 Receptor kinase-like Gene Family AT4G23190 50.240 1.55e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3174 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3174 - - aip:107621503 1120.53