Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3172 ATGGTTGCTACATACCATTACCAACGCTTAGTTTTCACTCTTCTCTTCACCTTCCTCTGTTTCCTTGCTGTTTTCTCACATGCAGCCAGTTCCAGAGTCAAACTCAAACAAGGTGAACTGATCAGAGACAAACAACGTGAGACTCTGGTGTCAGAAGAGTTAGAATTCGTGATGGGTTTCTTCTCTCTCGAAAACTCCACTTCACGCTACGTTGGGATATGGTACTACAACATTCCTGGTCCTGCAGTCATCTGGGTCGCAAACAGAGACAAACCCATCAAAGACGCAGGCGGCGCCATCACCATAGCCAGCGACGGCAACTTGGTGGTCCTCGACGGAGAGATGAACCAGGTCTGGTCCAGCAACGTTTCCGTTCCTAGCAACAGGAAGAACAGTTCTGAAGCTCTGCTTCGTGACGATGGTAATCTTGTGGTTTCAAGTCACGGGGAGGAGTTATGGCAGAGCTATGAGAATCCAACGGATACTTATGTCCCCGGAATGAAGGTTCCGGTGGGAGCTTCGTCGGCGGGGAAGGGCTTCACGTTTAGGTCATGGAAGTCAGCGACGGATCCTTCGCCGGGGAACTACAGTATGGGGGCGGATCCTGAAGGAAGTGGGTACTGGGATGGGAGGATTTTCACTGGGGTGGAGATGACTGGAAGCTTGCTCTATGGTTTTACACTGAATGGGGATGGTGAAGGAGGAAGGTACTTTGTGTATAATCAGCAGAATAGTACTAAGGTGAGGTTTCAGATTGGGTATGATGGGTTTGAAAAGGAGTTCAGCTGGAATGAAGGTGAGAAAGATTGGAGTGAGGAGCAGAGAGGGCCTGCTAATGAGTGTGAGGTTTATGACAAGTGTGGTAGTTTTGCAGCTTGTGGTTTGTCAGATTCAGGTTTAGCTGTTTGTAGTTGCTTACAAGGGATTACAAAGCTCAAGGCTGAGAGAAATGCTAGTTCTGGGGATGAGATGAGTGATGGAGAAGATGGGTTCTTGGTAAGGAGGTGTATGAAGTTGCCGGACTTCGCACATGTAGTCAGCACCGAGGATTGCCGGAGCAATTGTTTGAAGAATGATTCATGCACTGCGTATGCTGAAGTTCTTGGAATTGGGTGCATGGTTTGGTATGAGGAGTTGCTTGATGTTCAAGAATTTGATAATGTAGGAAATACACTGCACATTCGCCTCGCTCATTCTGATTTAGATGATGGAGGAAAAAAGAACAATGTTGTCATCATATCAACTGTTGTGGCAGGGTTGATCTGCCTTGGAATCATTGTCTGGGTGGTGTGGAGGTTCAAGGGAAAACTCAAAGCAGTTCCTACAACTTCCTCAGCTTCATGTTGCAATAATAGTGATGTACTGCCAGTCCTTGATGCAAGGAAGAGCAGAGAAATGTCTACAGAATTTACAGGATCAGCTGAACTTAGTTTGGAAGGGAATCAAAGTGGACCAGAACTTCCATTTTTCACTTTTAGTTCAATTGCAAAAGCCACAAACAATTTTTCAGAAGAAAATAAGCTTGGGCAAGGAGGCTTTGGTCCTGTCTATAAGGGAATGCTTCCTAGCGGAGAACAAATAGCTGCAAAGAGACTTTCAAGAAAGTCTAATCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAACATAGGAATCTGGTTAGACTTATGGGTTGTTCTGTTCAAGGGGAAGAAAAGTTGCTGGTATATGAATTCATGCCGAACAAAAGCTTGGATTTCTTTTTATTTGATTCAGTCAAGCAAAAACAATTAGACTGGACAAGACGCTTTGAAATCATTGAAGGCATTGCAAGAGGACTACTTTATCTGCATCGTGATTCAAGACTCAGAATAATACATCGAGATCTAAAAGCGAGCAACATTTTGTTAGATGAAAACATGAACCCAAAAATATCAGACTTTGGCCTGGCCCGGATATTTGGTGGAAACCAGAATGAAGCCAATACAAACAGAGTGGTTGGTACATATGGTTATATGTCCCCGGAATATGCAATGGAAGGTCTGTTTTCAGTTAAATCTGATGTATATAGTTTTGGTGTATTGCTACTAGAGATTGTTAGTGGCCGCAGGAACACTAGCTTTCGTCATTCAGATGACTCAAGTCTCATAGGATATGCATGGCATCTTTGGAATGAACAGAGAGCAATGGAGCTTGTTGATCCTTGCATTCGCGATTCTACTCCTAGAAACAAAGCTTTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCATCTCTTAGACCAAACATGTCGGCAGTAGTTTTGATGTTGGAAAGTGAAGCAACAACTCTCCCATTGCCTGCACAACCTCTGATTACTTCCATGAGGAGATCTGAGGATAGAGAATTTTTCACGGATGGCATTGTTGATGTTTCAAATGATCTAACGGTCACAATGGTTGTAGGGAGATAG 2457 0.4392 MVATYHYQRLVFTLLFTFLCFLAVFSHAASSRVKLKQGELIRDKQRETLVSEELEFVMGFFSLENSTSRYVGIWYYNIPGPAVIWVANRDKPIKDAGGAITIASDGNLVVLDGEMNQVWSSNVSVPSNRKNSSEALLRDDGNLVVSSHGEELWQSYENPTDTYVPGMKVPVGASSAGKGFTFRSWKSATDPSPGNYSMGADPEGSGYWDGRIFTGVEMTGSLLYGFTLNGDGEGGRYFVYNQQNSTKVRFQIGYDGFEKEFSWNEGEKDWSEEQRGPANECEVYDKCGSFAACGLSDSGLAVCSCLQGITKLKAERNASSGDEMSDGEDGFLVRRCMKLPDFAHVVSTEDCRSNCLKNDSCTAYAEVLGIGCMVWYEELLDVQEFDNVGNTLHIRLAHSDLDDGGKKNNVVIISTVVAGLICLGIIVWVVWRFKGKLKAVPTTSSASCCNNSDVLPVLDARKSREMSTEFTGSAELSLEGNQSGPELPFFTFSSIAKATNNFSEENKLGQGGFGPVYKGMLPSGEQIAAKRLSRKSNQGLEEFKNEMMLIAKLQHRNLVRLMGCSVQGEEKLLVYEFMPNKSLDFFLFDSVKQKQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRRNTSFRHSDDSSLIGYAWHLWNEQRAMELVDPCIRDSTPRNKALRCIHIGMLCVQDSASLRPNMSAVVLMLESEATTLPLPAQPLITSMRRSEDREFFTDGIVDVSNDLTVTMVVGR* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3172 818 ProSiteProfiles Bulb-type lectin domain profile. 32 158 IPR001480 -
Lja6g3172 818 ProSiteProfiles Protein kinase domain profile. 502 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3172 818 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Lja6g3172 818 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 1 818 - -
Lja6g3172 818 Gene3D Phosphorylase Kinase; domain 1 465 577 - -
Lja6g3172 818 CDD STKc_IRAK 508 773 - -
Lja6g3172 818 SMART ntp_6 326 396 IPR003609 -
Lja6g3172 818 SUPERFAMILY Protein kinase-like (PK-like) 485 796 IPR011009 -
Lja6g3172 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 191 IPR036426 -
Lja6g3172 818 CDD B_lectin 47 159 IPR001480 -
Lja6g3172 818 ProSiteProfiles PAN/Apple domain profile. 325 397 IPR003609 -
Lja6g3172 818 Pfam Protein tyrosine and serine/threonine kinase 505 770 IPR001245 GO:0004672|GO:0006468
Lja6g3172 818 SMART blect_4 40 159 IPR001480 -
Lja6g3172 818 CDD PAN_AP_plant 326 397 - -
Lja6g3172 818 Pfam D-mannose binding lectin 83 186 IPR001480 -
Lja6g3172 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Lja6g3172 818 Pfam S-locus glycoprotein domain 205 310 IPR000858 GO:0048544
Lja6g3172 818 Gene3D - 27 157 IPR036426 -
Lja6g3172 818 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 818 - -
Lja6g3172 818 PIRSF SRK 5 818 IPR024171 GO:0004674
Lja6g3172 818 SMART serkin_6 502 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3172 818 Pfam PAN-like domain 326 382 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3172 Lja-Chr6 60231093 60234846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3172 403 795 Receptor kinase-like Gene Family AT4G05200 51.621 8.18e-132 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3172 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3172 - - lja:Lj6g3v2130160.1 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3172 6 60231093 60234846 Lja6g3172 6 60231093 60234846 ECH