Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3170 ATGTGGTTCAGTCAGTTTAAGTTCATAGAGATACCCATTTATCTAGTACTTTTCTGTTTGTGCATTCATGTCGGCACTTCCCTAGACACCATCACATCATCCTATGTCCTCAAGGACCCTGAAACTTTAAGCTCCAGTAACGGTTTCTTTCACTTTGGATTCTTCACCCCTGAAAACTCAACCTTTTACTACCTGGGAATATGGTGCATGTCTAAACCCCCTGTGGTGTGGGTAGCTAATAGAAACCAACCACTGAATGATTCTTCTGGGACAGTCAAAATATTCGAGGGTGGAAATCTTGTTCTGGTGAATGGACAGCAAGAAGTTCTCTGGTCAACAAATGTGTCCAATAATGCATTGACTACAATGGCTAGGCTACTAAACACTGGCAACCTTGTACTGCAAGAAAGAACTACAGGAAGGAGGGTGTGGCAGAGTTTTGAGCACCCTTGTGATACATTGTTGGAGAAAATGAAGCTTTATTCAGATAAAACTAGAATGAAAGTCACCTCATGGAAAAGTCCTCAGGATCCATCCATTGGAAACTTCTCTATGGGTCCTGAACGCCTAGAAATCCCTGAAGTTTTCACCTGGAGAGGAAATAAACCATATTGGCGAAGTGGTCCGTGGAACGGTCAAACCTTTCTTGGAATACCTGACATGGAAAATAATTACCTTGATGGATTTAAGTTGGGTCTGCCAGATGATGGGGATGGCAGTTATTATGTCACTTATACCTATTCAAACCAGTCTAAGTTGACAACATATGTGTTGGATTATCAAGGAACCACATACAAATTTGACTGGGATTTTGCAAAGAGAAATTGGTTTATCGAATGGTCAGTTCCAAAATCCGAGTGTGATGTTTATGGCACATGTGGAGTGTTTGGAAGCTGCAATCCTAGAAGTTCACCTATCTGCAGCTGTTTGACAGGATATGAGCCAAGGGATCCAGAGGAATGGGATAGACAAAACTGGACCGGTGGATGTGTTAGGAAGGAACCTTTGAAGTGTGAGAGAGTAACAAATGGGAGTGAAGCTGGAAACAAGGATGATGGGTTTGTGAAGCTCCGGAACACCAAAGTTCCAGACTTTGTCCAGCGGTCTTCTACTTTTTATGATGTTTGCAGAACTCAGTGCTTGCAAAACTGCTCTTGTTTAGCATATGCGTATGATGCTGGCATCGGTTGTATGATATGGATTTCAGACTTAATTGACATACAAAGGTTCTCAACTGAAGGAACTGATCTTTACATCAGGGTTCCCTATTCAGAACTTGATGAAAATAAGAAGAATGTAACAGCTATTATCGCAGTTACAGCGATAATAGGAACAATTCTAATTGTGGCATGTGGATATGTCTTGAGGAAAAGGACTAGAAAAGCAGAGAAAAGAAATCTGACAATTCAGAGCAAAAGCCATGTAAATGCCTTGAGTAAAGAGTTTAGATTCCCGGACCTTTCCCAATTTGTGTTTGAAGATCTTTCTACTGCAACAAACAACTTTCACTCAGATAATAAGCTTGGGCAAGGTGGTTTTGGACCAGTTTACAAGGGTATATTGGAAGATGGACAGGAAGTAGCAGTTAAAAGACTTTCAACAACATCTAGACAAGGGCTAGAAGAATTTATGAATGAGGTTGTGGTAATATCAAAGCTTCAACATCGTAACCTTGTCAGACTTTTTGGATGTTGTGTGGAAGGAGACGAAAAGATTTTGATCTATGAGTACATGCCAAACATAAGTTTGGATGCATATATGTTTGGTCCTCATAAAAAGGGAATAAGTTGGGAAAAACGTTTTAATATAATTGAAGGAATTGCTCGGGGTCTACTTTACCTTCATAGAGACTCTAGGCTAAGAATTATCCATAGAGACCTGAAGTTAAGTAATGTATTGTTGGATGAAGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCAAGGATTTTTGGTTGCGGTGTAGATCAGGCCAGCACTGAAAGGGTTGTTGGAACATATGGTTATATGTCCCCAGAATACGCCACGCAAGGGCTATTTTCAGAGAAGTCTGATGTCTTCAGCTTTGGTGTTTTACTGCTTGAGATTGTCAGCAGGAGAAAAAATAGCAGTTTTTCTAAGGATGCTGAATCTTTGAGCCTTTTAGGATTTGCATGGAAGCTGTGGAATGATGACAACAATGCATCTCTAATTGATCCAGAAATATCAAATTCTAGCTCTCATGCAGATATTATTAGATGCATCCATATTGGCCTTTTGTGTGTACAAGAACTTGCAAGAGACAGGCCAACAATGACTAATGTAGTTTCAATGCTAAGCAATGAGACTGTTAATCTTCCAACCCCACGGTACCCCGCATTCGTTGATTTCATTCAAAGGCAGACTAAGGTGAATGGAGAGGGCTCCATCAATTTTGTGAGTGTAACAAATCCCCAAGGAAGATAG 2445 0.4041 MWFSQFKFIEIPIYLVLFCLCIHVGTSLDTITSSYVLKDPETLSSSNGFFHFGFFTPENSTFYYLGIWCMSKPPVVWVANRNQPLNDSSGTVKIFEGGNLVLVNGQQEVLWSTNVSNNALTTMARLLNTGNLVLQERTTGRRVWQSFEHPCDTLLEKMKLYSDKTRMKVTSWKSPQDPSIGNFSMGPERLEIPEVFTWRGNKPYWRSGPWNGQTFLGIPDMENNYLDGFKLGLPDDGDGSYYVTYTYSNQSKLTTYVLDYQGTTYKFDWDFAKRNWFIEWSVPKSECDVYGTCGVFGSCNPRSSPICSCLTGYEPRDPEEWDRQNWTGGCVRKEPLKCERVTNGSEAGNKDDGFVKLRNTKVPDFVQRSSTFYDVCRTQCLQNCSCLAYAYDAGIGCMIWISDLIDIQRFSTEGTDLYIRVPYSELDENKKNVTAIIAVTAIIGTILIVACGYVLRKRTRKAEKRNLTIQSKSHVNALSKEFRFPDLSQFVFEDLSTATNNFHSDNKLGQGGFGPVYKGILEDGQEVAVKRLSTTSRQGLEEFMNEVVVISKLQHRNLVRLFGCCVEGDEKILIYEYMPNISLDAYMFGPHKKGISWEKRFNIIEGIARGLLYLHRDSRLRIIHRDLKLSNVLLDEELNPKISDFGMARIFGCGVDQASTERVVGTYGYMSPEYATQGLFSEKSDVFSFGVLLLEIVSRRKNSSFSKDAESLSLLGFAWKLWNDDNNASLIDPEISNSSSHADIIRCIHIGLLCVQELARDRPTMTNVVSMLSNETVNLPTPRYPAFVDFIQRQTKVNGEGSINFVSVTNPQGR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3170 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Lja6g3170 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 13 795 - -
Lja6g3170 814 Gene3D - 23 147 IPR036426 -
Lja6g3170 814 SMART ntp_6 349 421 IPR003609 -
Lja6g3170 814 PIRSF SRK 3 814 IPR024171 GO:0004674
Lja6g3170 814 Pfam PAN-like domain 349 407 IPR003609 -
Lja6g3170 814 CDD PAN_AP_plant 335 422 - -
Lja6g3170 814 CDD STKc_IRAK 508 772 - -
Lja6g3170 814 ProSiteProfiles PAN/Apple domain profile. 338 422 IPR003609 -
Lja6g3170 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 212 IPR036426 -
Lja6g3170 814 Pfam Protein tyrosine and serine/threonine kinase 504 771 IPR001245 GO:0004672|GO:0006468
Lja6g3170 814 SUPERFAMILY Protein kinase-like (PK-like) 478 772 IPR011009 -
Lja6g3170 814 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Lja6g3170 814 Gene3D Transferase(Phosphotransferase) domain 1 578 780 - -
Lja6g3170 814 SMART serkin_6 502 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3170 814 PANTHER - 13 795 - -
Lja6g3170 814 Pfam D-mannose binding lectin 75 173 IPR001480 -
Lja6g3170 814 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Lja6g3170 814 SMART blect_4 34 150 IPR001480 -
Lja6g3170 814 ProSiteProfiles Protein kinase domain profile. 502 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3170 814 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Lja6g3170 814 CDD B_lectin 34 150 IPR001480 -
Lja6g3170 814 Gene3D Phosphorylase Kinase; domain 1 460 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3170 Lja-Chr6 60219580 60223641 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3170 461 792 Receptor kinase-like Gene Family AT4G23140 54.867 7.69e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3170 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3170 - - lja:Lj6g3v2130140.1 1377.46