Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3168 ATGCAGAACTTGAAGCTGCCGGAGATTACAAACAGGGTGTTTGTGAACAGGAGCATGAACCTTGTGGAATGTAAAGATTTATGCAGCAGGAACTGTTCTTGCAGTGGTTATGCCAACATTAAGATCATCACCAATGGAGGGAGTGACAAAGCCAGAAAAGACTTACTAGATTGGAAGAAGCGATTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTGGATCTCAAGACAAGCAACATTCTACTTGACAGTGAAAGAAACCCAAAAATATCAGACTTTGGGATGGCAAGAATTTTTGGCACAAATCAGATAGAAGCAAATACACTCAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCTATGTATGGAAAATTTTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTTCTAGTGCTAGAAATCATATCTGGAAAGAAAAACAGAGGATATAACTCAAGCGAGGATACGAATCTTTTAGAGCATGCTTGGAGGTTGTGGAGAGAAGGCAATGCATTGAGACTTATTGATCAATCAATTAATGATTCAAATTCGATATCTGAAGTTCTGAGATGCATACATATTGGACTCTTGTGTGTCCAAGAATGTGCACAGGATAGACCTACAATGTCCTCAGTGATTTTGATGTTGAACAGCGAAGTTGCAATAATGCCTCAACCAAGGAACCCTGGGTTTTCCCTAGGAAAGAGTCCTCCAGAAACTGATTCTTCTTTAAGTAAGCAAGATGAATCATGGAGTGTGAACCAAGTCACAGTCACATTGCCGGATGCAAGATAA 810 0.3951 MQNLKLPEITNRVFVNRSMNLVECKDLCSRNCSCSGYANIKIITNGGSDKARKDLLDWKKRFNIICGIARGLLYLDLKTSNILLDSERNPKISDFGMARIFGTNQIEANTLRVVGTYGYMSPEYAMYGKFSVKSDVFSFGVLVLEIISGKKNRGYNSSEDTNLLEHAWRLWREGNALRLIDQSINDSNSISEVLRCIHIGLLCVQECAQDRPTMSSVILMLNSEVAIMPQPRNPGFSLGKSPPETDSSLSKQDESWSVNQVTVTLPDAR* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3168 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Lja6g3168 269 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 48 - -
Lja6g3168 269 PANTHER - 1 48 - -
Lja6g3168 269 Gene3D Transferase(Phosphotransferase) domain 1 26 229 - -
Lja6g3168 269 Pfam Protein kinase domain 70 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3168 269 PANTHER - 49 267 - -
Lja6g3168 269 MobiDBLite consensus disorder prediction 232 258 - -
Lja6g3168 269 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 49 267 - -
Lja6g3168 269 MobiDBLite consensus disorder prediction 240 258 - -
Lja6g3168 269 SUPERFAMILY Protein kinase-like (PK-like) 51 250 IPR011009 -
Lja6g3168 269 Pfam PAN-like domain 1 45 IPR003609 -
Lja6g3168 269 Pfam Domain of unknown function (DUF3403) 223 269 IPR021820 GO:0004674
Lja6g3168 269 SMART serkin_6 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3168 269 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3168 Lja-Chr6 60213053 60215914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3168 37 267 Receptor kinase-like Gene Family AT4G23150 54.321 5.54e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3168 Pkinase 9.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3168 - - gmx:100797331 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3168 6 60213053 60215914 Lja6g3168 6 60213053 60215914 ECH