Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3163 ATGCAAGTCCTCTGCTTCTTCCTCTTTTGCTTCATGGCATTGGCGCCACACACTTTCTCAGCAGATACCTTAACCGCAACACAAACTCTCGCAACCAACCAGACCCTCCAATCATCTAACGCTGTTTTCATCCTTGGATTCTTCCCCAGCAGCACCAATCCCACTTCGTACTACCTGGGCATATGGTACAAGGACTTGGGTGATAGAACAGTGGTTTGGGTGGCAAACAGAGACAACCCAGTTATTGACAACAACTCCACAGGATTAATATTTCTCAAGATCAACTCAGAAAATGGAAACATAGCTCTTGTTAACTCATCTGCAGGGAACCCTGTATGGTCCTCCACCAATCAAACCAAAGCTAGCAACCCAGTTCTTCAGCTTTTGGACACTGGCAATTTAGTTATTAGAGAAGAAGCTTCCCATGCTAGTAATAATTATCTATGGCAGAGCTTTGATCACCCAACGGATACGTTGTTACCGGATATGTACATGGGTTGGAACCTAGACAAGGGCACGGAGGATCACCTAACATCATGGAGGGACACAGATAAAGATCCTTCAACCGGCGATTGCACGTTGAAGATACGTCCTCAAGGACTCCCAGAAGGTTACCTGCGGATAAACCAGACCAAAATATATAGAAGTGGGCCTTGGAATGGTGACAGATTCAGCGGGGTGCCGGAGATGAAGCATAATACGAATTCTATTGTGTTCAACTTCTCCGCACAACAACATGGGGTGTACTACTCGTTCCATATTGGCAACCGATCCATTTTCTCAAGGCTTATAGTCACCTCTAGTGGTGAACTTCAGCGCCTCACATGGGTTCCTAGCAGCCAGAGTTGGAACAAGTTCTGGTATGCACCGAAAGATGAGTGTGACCATTACAGAACGTGTGGTCCTTATGGTATCTGCGATGCTGATGCTTCACCGATATGCAAGTGTGTGAGCGGGTTCAGCCCCAAGAATCAGCAGGCTTGGAATTTGAGACAAGGGTCTGGTGGGTGTGTGAGGAACAACAATTTGGACTGCAGGAGTGATAAATTTTTGACTGTTAAGGTCAAGTTGCCTGACACAACCATGGTATATATGAACAGGAGTATGAACCTTGTGGAATGTAAAGATTTGTGCAGAAGGAACTGTTCTTGCACTGCTTATGCCAACATTGAGACCGCCAATGGAGGGACTGGTTGTGTCATGTGGATTGGTGAGCTCATTGACATGAGGCAGTACGCTGCTGGTGGTCAAGATCTCTATGTCAGATTAGCAGCTTCAGATGTTGATGACTCTCACAAGAAAAATAACAGTGCTAGGATTGCAGGAACTACAGTTTGTGCAGTTGCTGTAATTTTAGGATTATTGGGTTTCATTTTATTTAGGAAGAGGAAATTGCTAAGTAGATTCAATGGGAAGACAAACTCCAAAGGTTCTCTCCAAAGAAATCGGGATTTGCTAATGAATGAGGTGATATTTCCAACTAATAGAGATAGAGAAAACTCAGGAGAAAGTAACATGGATGAACTAGATTTGCCATTATTTGATTTTAATACCATAACAATGGCTACAAACAATTTCTCTGAAGCAAATAAACTTGGGGAAGGAGGATTTGGTATTGTCTACATGGGCAGGTTAGTGGAAGGCCAAGAAATTGCTGTCAAGAGGTTGTCTAAGAACTCTGGGCAAGGAACTGAAGAGTTTAAGAATGAAGTGAAGTTAATTATCAAGCTTCAACATCGAAATCTTGTGCGGCTATTTGGTTGCTGCATTGAGATGAATGAAAAGCTTCTGGTGTATGAGTACATGGAGAATAAAAGTCTCGATTCCTTTTTGTTTGACAAAACCAGAAATCACTTACTAGACTGGAAGATGCGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTATATCTGCACCATGATTCTAGATTAAGGATTATTCATAGGGATCTCAAGGTAAGCAACATTCTTCTTGACAGTGAAATGAACCCAAAAATATCAGACTTTGGTCTGGCTAGAATTTTTGCCACAAATCAGACAGAAGCAAATACACTCAGGGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCTTTGGATGGGAACTTCTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTTCTTGTGCTAGAGATCATAACTGGAAAGAAGAATAGAGGATTCTACTACTCTAACAAAGATATGAATCTTTTAGGGAATGCTTGGAGGCATTGGAGAGAAGGCAATGCATTAGAGCTTATTGATGAATCAATTAGTGGTTCATATTCAGCGTGTGAAGTTCTTAGATGCATACATATTGGGCTCTTGTGTGTTCAAGAACTTGCAGATGATAGACCAACAATGTCTTCAGTGATCTTAATGTTGAACAATGAAACTCCATTAGTGCTACAACCTAGAAACCCTGGGTTTTGCCTAGGAAAGAATCCTCCAAAGACTGATTCTTCTTCAAGTAATCAAGATGAAACCTGGAGTGTGAACCAAGTTACAGTCACATTACTAGATGCAAGATAA 2538 0.4192 MQVLCFFLFCFMALAPHTFSADTLTATQTLATNQTLQSSNAVFILGFFPSSTNPTSYYLGIWYKDLGDRTVVWVANRDNPVIDNNSTGLIFLKINSENGNIALVNSSAGNPVWSSTNQTKASNPVLQLLDTGNLVIREEASHASNNYLWQSFDHPTDTLLPDMYMGWNLDKGTEDHLTSWRDTDKDPSTGDCTLKIRPQGLPEGYLRINQTKIYRSGPWNGDRFSGVPEMKHNTNSIVFNFSAQQHGVYYSFHIGNRSIFSRLIVTSSGELQRLTWVPSSQSWNKFWYAPKDECDHYRTCGPYGICDADASPICKCVSGFSPKNQQAWNLRQGSGGCVRNNNLDCRSDKFLTVKVKLPDTTMVYMNRSMNLVECKDLCRRNCSCTAYANIETANGGTGCVMWIGELIDMRQYAAGGQDLYVRLAASDVDDSHKKNNSARIAGTTVCAVAVILGLLGFILFRKRKLLSRFNGKTNSKGSLQRNRDLLMNEVIFPTNRDRENSGESNMDELDLPLFDFNTITMATNNFSEANKLGEGGFGIVYMGRLVEGQEIAVKRLSKNSGQGTEEFKNEVKLIIKLQHRNLVRLFGCCIEMNEKLLVYEYMENKSLDSFLFDKTRNHLLDWKMRFNIICGIARGLLYLHHDSRLRIIHRDLKVSNILLDSEMNPKISDFGLARIFATNQTEANTLRVVGTYGYMSPEYALDGNFSVKSDVFSFGVLVLEIITGKKNRGFYYSNKDMNLLGNAWRHWREGNALELIDESISGSYSACEVLRCIHIGLLCVQELADDRPTMSSVILMLNNETPLVLQPRNPGFCLGKNPPKTDSSSSNQDETWSVNQVTVTLLDAR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3163 845 Pfam PAN-like domain 345 409 IPR003609 -
Lja6g3163 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Lja6g3163 845 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Lja6g3163 845 Pfam Protein tyrosine and serine/threonine kinase 529 794 IPR001245 GO:0004672|GO:0006468
Lja6g3163 845 ProSiteProfiles PAN/Apple domain profile. 345 424 IPR003609 -
Lja6g3163 845 ProSiteProfiles Protein kinase domain profile. 526 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3163 845 Pfam Receptor serine/threonine kinase 480 516 IPR022126 GO:0004674
Lja6g3163 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 220 IPR036426 -
Lja6g3163 845 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Lja6g3163 845 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Lja6g3163 845 CDD B_lectin 33 155 IPR001480 -
Lja6g3163 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 844 - -
Lja6g3163 845 CDD PAN_AP_plant 342 424 - -
Lja6g3163 845 SMART blect_4 27 155 IPR001480 -
Lja6g3163 845 ProSiteProfiles EGF-like domain profile. 290 326 IPR000742 -
Lja6g3163 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Lja6g3163 845 SUPERFAMILY Protein kinase-like (PK-like) 511 822 IPR011009 -
Lja6g3163 845 Pfam D-mannose binding lectin 70 181 IPR001480 -
Lja6g3163 845 CDD STKc_IRAK 532 799 - -
Lja6g3163 845 PANTHER - 8 844 - -
Lja6g3163 845 Gene3D - 17 153 IPR036426 -
Lja6g3163 845 SMART ntp_6 345 423 IPR003609 -
Lja6g3163 845 SMART serkin_6 526 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3163 845 Pfam Domain of unknown function (DUF3403) 806 845 IPR021820 GO:0004674
Lja6g3163 845 Gene3D Transferase(Phosphotransferase) domain 1 602 803 - -
Lja6g3163 845 ProSiteProfiles Bulb-type lectin domain profile. 21 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3163 Lja-Chr6 60168108 60171821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3163 430 830 Receptor kinase-like Gene Family AT4G23190 51.338 4.18e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3163 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3163 - - gmx:100797331 1205.66