Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3161 ATGAAGAAGTCATGCGAGCTCTGCAACAGTCCCGCAAAACTGTTCTGTGAATCAGATCGAGCCAGCCTCTGTTGGCAATGTGATGCCAAGGTTCACTCTGCAAACTTCCTCGTCACCAAGCATTCCAGGTTTCTCCTCTGCCATGTTTGTCAATCTCCAACAGCTTGGCATGGCACCGGGCCCAAGTTTGTACCCACAATCACCGTTTGCAATCACTGTGTTACCAAACAAAATGATCATGATGATGATGGTGAAGGAACAGAGGAGGATGATACAGAAAACGATGGTGATACTGATGTAGAAGAAGAAGATGATGATGATGATGAAGAAAACCAAGTGGTTCCACCATGGTCATCTACACCGCCACCACCGGTTTCAAGTTCTTCAAATAGTGCAACTAGTTCTAGAAGATTCTCTCATGGTCAAGACTCAAGAAGCTATGATCACAAGTATAGTTATGTTTCCAAGATCCCCTGTTTTTCTTCCTCTGTTCTGTTCTGTTTTTTCTTGTCCTTCTAA 519 0.4393 MKKSCELCNSPAKLFCESDRASLCWQCDAKVHSANFLVTKHSRFLLCHVCQSPTAWHGTGPKFVPTITVCNHCVTKQNDHDDDGEGTEEDDTENDGDTDVEEEDDDDDEENQVVPPWSSTPPPPVSSSSNSATSSRRFSHGQDSRSYDHKYSYVSKIPCFSSSVLFCFFLSF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3161 172 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 1 149 - -
Lja6g3161 172 MobiDBLite consensus disorder prediction 83 112 - -
Lja6g3161 172 MobiDBLite consensus disorder prediction 124 140 - -
Lja6g3161 172 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Lja6g3161 172 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lja6g3161 172 SMART bboxneu5 1 46 IPR000315 GO:0008270
Lja6g3161 172 MobiDBLite consensus disorder prediction 78 146 - -
Lja6g3161 172 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 149 - -
Lja6g3161 172 CDD Bbox1_BBX-like 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3161 Lja-Chr6 60153428 60154001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3161 1 109 C2C2-CO-like Transcription Factor Family AT4G27310 47.706 2.47e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja6g3161 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3161 - - gmx:100306080 153.295