Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3158 ATGGACTTTGATATTGAAGACCCACTAGCTAGTTTCAAAGAACAGAAAACATGTACTCCTATATCAGAACTCTTTGCCTCGGAATCTGATCACATGCCCTCACCAAACTGCTCAAGTTCAACACATTTTCACGTTTTCCAATGTGAAGCCATTTCTCTCACACTTCAGGTCCAGCTTTCTTGCAATTTGGACCCATTTGTAGCTTATCTTGCTATAAATTACTTGCACCGCTTCATGTCAATCCAAGAAATTCCGCAGAAGAAGCCATGGTTACTCAAGCTTGCTGTCATATCCTCTCTTTCTCTCGCTTCAAAGATGATGAACACACCTATATCATTTTCCATTATGCAGAAAGCAGGTTGCAACTTTAAGGCTGAAAATATTCAGAGAATGGAACTTATCATTCTGGGGGCTCTGAATTGGCGTATGAGGTCAATAACACCTTTTCCCTTCTTGCATTTCTTCATCTCTTTAGCTGAAATCAAGGACCAATCACTGAAGCAAGCACTTAAAGAGAGAGCTTCAGAGATAATCTTCAATGCTCATAATGACATTAAGCTTTTAGAGTATAAACCTTCAACTATTGCAGCAACTGCCCTTATCTGTGCATCTCATGAACTAGTCCCCCAGCAATATTCTGTTTTGAGAGCTTCAATTACAGCTTGTGAGCATGTAGACAAGGAGACATTGTCCAAGTGTTTCGATTTGATGCAAGAGATGGTGAGAGTAGAAGCACTGATGGTAGATACTACTAGCAGCACTGAAACTCCAGTGAGTGTGCTGGACAGAAGCACCAAAAGGCAGAGAATTTGA 813 0.4071 MDFDIEDPLASFKEQKTCTPISELFASESDHMPSPNCSSSTHFHVFQCEAISLTLQVQLSCNLDPFVAYLAINYLHRFMSIQEIPQKKPWLLKLAVISSLSLASKMMNTPISFSIMQKAGCNFKAENIQRMELIILGALNWRMRSITPFPFLHFFISLAEIKDQSLKQALKERASEIIFNAHNDIKLLEYKPSTIAATALICASHELVPQQYSVLRASITACEHVDKETLSKCFDLMQEMVRVEALMVDTTSSTETPVSVLDRSTKRQRI* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3158 270 Gene3D - 23 235 - -
Lja6g3158 270 Pfam Cyclin, C-terminal domain 146 241 IPR004367 -
Lja6g3158 270 Gene3D - 34 144 - -
Lja6g3158 270 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 268 - -
Lja6g3158 270 PANTHER CYCLINS 5 268 IPR039361 -
Lja6g3158 270 Pfam Cyclin, N-terminal domain 28 143 IPR006671 -
Lja6g3158 270 CDD CYCLIN 61 136 IPR013763 -
Lja6g3158 270 SMART Cyclin_C_2 146 264 IPR004367 -
Lja6g3158 270 SUPERFAMILY Cyclin-like 22 143 IPR036915 -
Lja6g3158 270 SMART cyclin_7 52 137 IPR013763 -
Lja6g3158 270 SUPERFAMILY Cyclin-like 129 243 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3158 Lja-Chr6 60139163 60140611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3158 1 263 Core Cell Cycle Gene Families AT4G03270 39.858 4.16e-57 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3158 K18812 - gmx:100799985 414.846