Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3152 ATGGTGGGTCCCCACCATGCCTTCTTGGTGGGGTTGTTTGTCTTCTGGTGCACGTTGGTGGTGGCAGTGGCGAGGCCACTGCGTTCTGGGGCCCCCCTGCGTTCTTCTACTGAGCAAGAAGCGCTTCTCCAACTGAGTGATTCTCTGGGTTTAAGGAGCAAAGATTGGCCAAGAATGTCGGACCCTTGTATGACCTGGTCTGGTATCGTCTGCAAGAACGGTCGTGTGGTCTCAATCAATATCTCAGGATTGAGAAGAACAACACCCGAGAGAAGTCACCACCGTCAATTTGCAATGGAAGCTTTGGCCAATTTCACTCTCTTGAAGGCCTTCAATGCCTCTGGTTTCCTGCTTCCAGGTCCAATGACCAAGTGGTTTGGCTTCAACCTCCCTGCACTTAAGGTGTTTGATCTTCGTTCTTGCTCCATTACTGGTTCAATTCCTGATAGTTTGGGTCAACTCTCTTCACTTGTCATTCTTGACATTTCTAATAATTCTCTTTCTGGCCCGATTCCCCCTAGCATAGGAAATTTATTGGTTTTAAAGTACTTAAATGTTTCCAACAATCACCTGGAGTATTTCACTCTTGAGCTGTGGTCTCTTCCAACTTTAGCTGTATTGGATTTATCCTGCAACCAATTCACTGGTGTTATAGTTGATTTTTCTTGGGCCGTTAATTCTTCATCAGTGCAGAAACTGGATATTTCGCAGAATATATTTTACGGGGGTATTCCTAGGCTCAAATGGTTTAGATCTCTAAACCTGTCCCACAACTACCTTCAAGGTAAGTTGCCAAATCCATTAGCTAATCTAGTTGCAGAAAAGAACTGTCTGCCAAAAGTGCCAGGACAAAGAAGCAGCAGGGAGTGTGATATGTTCTATCATAATAGGGGGCTTACATTTGTTGGCGGCATTGGACACACGAGTAATAATATAAAAGAGATTGTCCTAGTATCATTCTCTGGTGTTCTCTGTACAGTTGCAGTGCTCGTGTTTGTAGCAGTTTTGTTTCTTTCGAAGGATAGTTCTCAGTCCGTTGGAAATATAGGACTAGGAGTGACATTTACATATAACCAGTTGCTCCAAGCAACGGGAGATTTCAATGATGCAAAACTTATCAAACATGGCCACACTGGCGATCTTTTCAACGGATTTTTGGAGTGTGGCACGCATGTTGTAATCAAAAGGACCGGCACATATTCAACTAAGACGGACGCTTACCTATCGGAACTGGACTTTTTCAACAAGGTTTCTCATAAAAGATTTGTACCCTTGTTGGGTCATTGTCTCGAAAACGAGAATCATAAGCTTTTGGTTTATAAGCAGATGCCATACGGGAATATGTCTGATTGCTTATTGCAATTGGACTGGATAACTAGGTTCAAAATTGCTACTGGAGTAGCAGAGGCCTTAACGCATCTGCATCATGAATGTATTCCACCCATTGTTCACAGAGATATTCAGTTAAGCAGTATACTTCTAGATGATAACTATGAAGCTCGGCTGGGGAGTCTAAGTGAAGCCTGTGCTCAAGAAGGAGAAACTCTGAGCGGGTCCTCTGAGCAAGGCAAATCTGGTTTATTAACAACAGTTTGCGCCTATGACGTTCATTGCTTTGGGAAAGTGTTACTTGAGTTGATTACCGGTAATATTGGACTCCGTGCATCCAATGAGGGTGACCTATACAGATGTGTTGATCAGATTCTACCTTGCACCTTGGACAAGGAGGCTGTGAAAAATTTTTTGGACCCAACTCTGCGTGTTGATGAGGATCTCTTAGAGGAAGTCTGGGCTACAGCCCTTGTGGCCAAAGCTTGTTTAAACCTCAATCATTCAGACAAGCCGCGAATGGATTTGGTTCTCTTGGCCTTGCAGAGCCCTTCAAAAGTTCTAGAATTCTGTGCAGAGTCTGCTTCACATATGTAG 1926 0.4382 MVGPHHAFLVGLFVFWCTLVVAVARPLRSGAPLRSSTEQEALLQLSDSLGLRSKDWPRMSDPCMTWSGIVCKNGRVVSINISGLRRTTPERSHHRQFAMEALANFTLLKAFNASGFLLPGPMTKWFGFNLPALKVFDLRSCSITGSIPDSLGQLSSLVILDISNNSLSGPIPPSIGNLLVLKYLNVSNNHLEYFTLELWSLPTLAVLDLSCNQFTGVIVDFSWAVNSSSVQKLDISQNIFYGGIPRLKWFRSLNLSHNYLQGKLPNPLANLVAEKNCLPKVPGQRSSRECDMFYHNRGLTFVGGIGHTSNNIKEIVLVSFSGVLCTVAVLVFVAVLFLSKDSSQSVGNIGLGVTFTYNQLLQATGDFNDAKLIKHGHTGDLFNGFLECGTHVVIKRTGTYSTKTDAYLSELDFFNKVSHKRFVPLLGHCLENENHKLLVYKQMPYGNMSDCLLQLDWITRFKIATGVAEALTHLHHECIPPIVHRDIQLSSILLDDNYEARLGSLSEACAQEGETLSGSSEQGKSGLLTTVCAYDVHCFGKVLLELITGNIGLRASNEGDLYRCVDQILPCTLDKEAVKNFLDPTLRVDEDLLEEVWATALVAKACLNLNHSDKPRMDLVLLALQSPSKVLEFCAESASHM* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3152 641 Gene3D Phosphorylase Kinase; domain 1 338 441 - -
Lja6g3152 641 SUPERFAMILY L domain-like 50 271 - -
Lja6g3152 641 Pfam Protein tyrosine and serine/threonine kinase 372 503 IPR001245 GO:0004672|GO:0006468
Lja6g3152 641 Gene3D Transferase(Phosphotransferase) domain 1 443 635 - -
Lja6g3152 641 SUPERFAMILY Protein kinase-like (PK-like) 343 624 IPR011009 -
Lja6g3152 641 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Lja6g3152 641 PANTHER RECEPTOR-LIKE PROTEIN 55 200 636 - -
Lja6g3152 641 PANTHER BNAA07G03560D PROTEIN 21 192 - -
Lja6g3152 641 ProSiteProfiles Protein kinase domain profile. 367 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3152 641 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Lja6g3152 641 Gene3D Ribonuclease Inhibitor 196 278 IPR032675 -
Lja6g3152 641 Pfam Leucine Rich Repeat 251 271 IPR001611 GO:0005515
Lja6g3152 641 Pfam Leucine Rich repeat 201 218 IPR001611 GO:0005515
Lja6g3152 641 PANTHER RECEPTOR-LIKE PROTEIN 55 21 192 - -
Lja6g3152 641 PANTHER BNAA07G03560D PROTEIN 200 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3152 Lja-Chr6 60108956 60111316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3152 55 512 Miscellaneous Gene Families AT4G39270 35.131 4.57e-98 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Lja6g3152 PK_Tyr_Ser-Thr 2.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3152 - - lja:Lj0g3v0008839.1 1281.16