Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3146 ATGGGAAGAAAATCAACACCCCAGGATGGGGAGGAAGAAAGCCTGCCGGTGCCGGACCATCTCCGGTGCAGCCGCACCGACGGAAAAAAATGGAGGTGCCGGCGGAGGGCGATGGAAAACGTGAAGCTCTGCGAGATACACTGTCTGCAGGGTCGGCATCGGCAGAACAAGGAGAAGGTGCCAGAGTCACTGAAGCTGCAGAGGAAGAGGAAGAAGGAGGAAAACGACGTCGTTGAAGAGATCAGGGTGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGCAATGTGATATTCAATTGGAGCTTATCAGGATGGTTCTGGAGAGAGAGGCTGAGAAGAAGAAGAAGAAGATGATGATGAGCAAGAACGAGGAATTGAATTACAGTGAGGGGGAGTTGAGGCAAGAATTTCCCAATGGGGTGATGGCAATTTCTCCTGCATCAACTTCCCATGATCACACCAATGTGGATTCTCACTGTGATGTTAAGGCTGTTGTTACACCACGTTTCTTCAGGTCCAAGAATGTTAACAGGGTCCCTGTTGACAAATTGAAGGTTGTCTCTGAAGGAAGCTTGAAGAAGTGTAGGAGGAGGAACTGTCATTGGTGCCAGAGAAGTGATTCTTGGAATCTTGTTGAGTGTTCCAGCTGCTTGACAGAGTTTTTCTGCATGGATTGCATCAAAGAACGGTATTTTGAGACTCAACATGAGGTTAAGATGGCATGTCCAGTGTGCCGAGGAACTTGCACCTGTAAAGATTGTCTGGCAAGTCAATACAAAGACAGTGAAAGTAAGGAATATTTGGCTGGTACAAGCAGAGCTGATAGAATTTTGCATTCTCATTATTTGGTTTGTGTGCTCCTTCCTGTAGTAAAACAAATAAGTAAAGACCAGCGTACAGAGCTCGAAACAGAAGTGATAGTTAGAGGGAAAAGTGTTTCGGATATTCTCATCAAGCAGGTCGAATTTGGATGCAATGAGAAAAATTACTGCAATTACTGCAAAACAGCCATTTTGGGTCCTCATAGAAGCTGCCTTAGTTGCTCCTACAGCCTTTGCTTCAGTTGTTCTCAGGCATTAAGCCAAGGAAGCACCTCCCAACAAATTAAATCTTCTTTATGCGAGCTACCTGACAAAGTTAACACTTGCATAGCTAGTGAAAGCCATCTCTTGGATGACAATAAGGCCATCTCTAATGGAAATTTAACTGATACTTCAATATCACCTGAGTGGACGTGTTGTAATGGTACTGACTCCGTATCATGCCCTCCGAGAGAGCTAGGCGGTTGCGGTGATAGCCACCTTGATTTGAGATGCGTTTTCCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGTTGCTCACTCTGTATTGATAAAGATCGGAAAAATAAAAGATATAAGAAATTGCAAGAAGCAGCTCAAAGAAAAGATTCTAATGATAATTGCTTATTTTATCCAACAGTTTTGGACATCAATAGTGATCATTTTGAACACTTTCAGAAACACTGGGGAAGATGCCATCCTGTAATAGTGAGAGATTTGCTCCAGAGTACACCAAACCTCCGTTGGGATCCACTGGTTATGTTCTCTTCTTATCTTGAGAGGAGCATTACAAGATATGAAAATAACAAGGACTTACTTGAAACTTGTTTGGATTGGTGGGAGGTAGAAATGAACGTTAGACAGTATTTTACAGGGTCTCTTAAATCTCAACCTCGGAAAAATACTTGGCAAGAGATGCTGAAACTAGAGGGATGGTTGTCTTCCAAACTATTCAAAGAACATTTTCCAGTTCATTTTGCTGAAGTAATTGATGCTCTTCCCCTTAAAGAATATATGAATCCCATGTCTGGTCTTCTGAACTTAGCTGCAAATTTGCCACCTGGGAGTCCAAAACTTGACATGGGACCATACGTGTATATTTCGTACGGCTGTGCTGACGAGAAAGCTTATTCGGTGACAAATCTCTGTTATGACTCATATGATGTGGTAAATATTATGGCAAATACCACAGATGTCCCTCCCTCTACCGAACAGCTTACGAAAATAAGCAAATTATTGAAAAAGCACACAGCGCTATGTCTAAGGAAGTCTTCTAATATTACTACCGAGCATGCAGAAGGCAGGGAGAGAGAGGAACTGCAGAATATTGTAAAAGAAGGAGCTGACTTTTTCAAGAGATTCAATAGGACATCTTGTATCTCAACTGAATCCAAAACAGTAGCTAGTCAGAATTTAAACACCAAGACTTCGGGCAAAAGAGAATGTGCTTCTGATTCTGATACTGAAAAGGCACAAAGCTCTTTATCTTTTGACAGGACAGTTCAAAGCACGGAAATGTCTCCAAATCGCAATTCTAAGAACCTTATTGAACACTCAGAAAGTGATAAAAGGGATGAATTTAGTGAGAATGCTGGTGCCCAGTGGGATGTCTTCAGAAGACAGGATGTACCAAAGCTCCTAGAATACCTGAAAAGACATTCTGATGAATTTTCTCATACCAGTGAATATCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCTTCTTTCTTGACAATGCTCATAAAATGAGACTTAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGCTGGAGAAGCTGTCATCATTCCAGCTGGATGCCCATACCAGATGAGGAATCCTAAGAGCTGTGTTCATGTGGTATTGGAATTTGTGTCCCCTGAGAATGTTACTGAGTCTATCCAATTGATTGATGAGGTCCGTCTTCTTCCAAAAGACCACAAAGCAAAAGTAGACAAGCTGGAGATGAAGAAAATGGCCCTCCACAGCATGAGCACAGCAATAGAAGAAATTCGTGAGCTTACTTGCAAAACATGA 2925 0.4191 MGRKSTPQDGEEESLPVPDHLRCSRTDGKKWRCRRRAMENVKLCEIHCLQGRHRQNKEKVPESLKLQRKRKKEENDVVEEIRVKKKKKKKKQKQCDIQLELIRMVLEREAEKKKKKMMMSKNEELNYSEGELRQEFPNGVMAISPASTSHDHTNVDSHCDVKAVVTPRFFRSKNVNRVPVDKLKVVSEGSLKKCRRRNCHWCQRSDSWNLVECSSCLTEFFCMDCIKERYFETQHEVKMACPVCRGTCTCKDCLASQYKDSESKEYLAGTSRADRILHSHYLVCVLLPVVKQISKDQRTELETEVIVRGKSVSDILIKQVEFGCNEKNYCNYCKTAILGPHRSCLSCSYSLCFSCSQALSQGSTSQQIKSSLCELPDKVNTCIASESHLLDDNKAISNGNLTDTSISPEWTCCNGTDSVSCPPRELGGCGDSHLDLRCVFPLSWIKEMEVKAEEIVCSYDFPETLDKSSSCSLCIDKDRKNKRYKKLQEAAQRKDSNDNCLFYPTVLDINSDHFEHFQKHWGRCHPVIVRDLLQSTPNLRWDPLVMFSSYLERSITRYENNKDLLETCLDWWEVEMNVRQYFTGSLKSQPRKNTWQEMLKLEGWLSSKLFKEHFPVHFAEVIDALPLKEYMNPMSGLLNLAANLPPGSPKLDMGPYVYISYGCADEKAYSVTNLCYDSYDVVNIMANTTDVPPSTEQLTKISKLLKKHTALCLRKSSNITTEHAEGREREELQNIVKEGADFFKRFNRTSCISTESKTVASQNLNTKTSGKRECASDSDTEKAQSSLSFDRTVQSTEMSPNRNSKNLIEHSESDKRDEFSENAGAQWDVFRRQDVPKLLEYLKRHSDEFSHTSEYHKKMVHPILDQSFFLDNAHKMRLKEEFEIEPWTFEQHAGEAVIIPAGCPYQMRNPKSCVHVVLEFVSPENVTESIQLIDEVRLLPKDHKAKVDKLEMKKMALHSMSTAIEEIRELTCKT* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3146 974 SUPERFAMILY Clavaminate synthase-like 513 964 - -
Lja6g3146 974 MobiDBLite consensus disorder prediction 780 806 - -
Lja6g3146 974 ProSiteProfiles Zinc finger RING-type profile. 199 245 IPR001841 -
Lja6g3146 974 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 973 IPR045109 GO:0032454|GO:0033169
Lja6g3146 974 MobiDBLite consensus disorder prediction 54 74 - -
Lja6g3146 974 MobiDBLite consensus disorder prediction 761 820 - -
Lja6g3146 974 Coils Coil 103 123 - -
Lja6g3146 974 Coils Coil 477 497 - -
Lja6g3146 974 PANTHER PROTEIN B160 16 973 - -
Lja6g3146 974 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Lja6g3146 974 ProSiteProfiles JmjC domain profile. 633 937 IPR003347 -
Lja6g3146 974 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g3146 974 SMART cupin_9 614 937 IPR003347 -
Lja6g3146 974 Pfam JmjC domain, hydroxylase 824 919 IPR003347 -
Lja6g3146 974 Pfam WRC 18 59 IPR014977 -
Lja6g3146 974 Gene3D Cupin 505 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3146 Lja-Chr6 60067673 60073745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3146 18 57 GRF Transcription Factor Family AT2G22840 57.500 1.03e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja6g3146 JmjC 8.2e-11 CL0029