Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3144 ATGGGGAGAACACCTTGTTGTGAAAAGAATGGCCTCAAGAAAGGGCCATGGACTTCCGAGGAGAACCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAACTGGAGAACACTCCCAAAGAATGCTGGGCTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGGTGGACAAACTATCTCCGGCCAGATATAAAGCGAGGTCGGTTCACATTTGAAGAGGAGGAGACAATAATTCAGCTTCATAGCATTCTTGGCAACAAGTGGTCTGCAATTGCATCTCGGTTACCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAACACTCACATTAGAAAGAGGCTTCTGAAGATGGGTATTGATCCTGTGACACACGCTCCACGCCTTGATCTATTAGACCTCTCTTCGATCCTCTATTCATCTCTCTCTGGTTCATCACAAATCAACCTTCAGAGGCTCCTTTCCATGCAGATGAATCCAGAGCTTCTAAATTTGGCTTCCTCACTCAACATGACGAGTGTTGTTGGTCAAAATGGTCAACACAACAACAACAACAACCAGTTCTACAACCCCCAAATCCAGAGCCAAATTCTACATTTTGATCAAGACCCTGTTCAAGATTGTAACACATTCAGCACCAGTTGTGTTTCATTGCCACAATTGGACTCATATCCATCAAATTTCACCGACTTTGGCTACCAACAAAATTCTCAGCAAAGTGATAATTGGGACAGTAATGAAATTGCTTATGTCCCTCAATTACCGAGCTATGATCATTATTATGGTTCTGATAATCAAAATTTCATGTGTCCTCCATTGTCAGAAGCTTCAACGTTTCATTCCAATAACAGCAATCAGAACTTCAGCTTTGCTTCAGTTCTGTCGACGCCATCGTCTAGTCCCACACCGTTAAATTCAAACTCCACGTATGTCAACGGGAGCAACACAGAGGATGAAAGAGAAAGCTATGATAGTAGTCACATGTTGAAATTTGAAATCCCAGACATTTTAGATGTCAATGAGTTCATGTAA 1035 0.4203 MGRTPCCEKNGLKKGPWTSEENQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLKMGIDPVTHAPRLDLLDLSSILYSSLSGSSQINLQRLLSMQMNPELLNLASSLNMTSVVGQNGQHNNNNNQFYNPQIQSQILHFDQDPVQDCNTFSTSCVSLPQLDSYPSNFTDFGYQQNSQQSDNWDSNEIAYVPQLPSYDHYYGSDNQNFMCPPLSEASTFHSNNSNQNFSFASVLSTPSSSPTPLNSNSTYVNGSNTEDERESYDSSHMLKFEIPDILDVNEFM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3144 344 CDD SANT 69 112 IPR001005 -
Lja6g3144 344 MobiDBLite consensus disorder prediction 293 324 - -
Lja6g3144 344 CDD SANT 16 61 IPR001005 -
Lja6g3144 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g3144 344 Gene3D - 13 66 - -
Lja6g3144 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja6g3144 344 Gene3D - 69 116 - -
Lja6g3144 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja6g3144 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g3144 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 339 - -
Lja6g3144 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g3144 344 PANTHER TRANSCRIPTION FACTOR MYB41 1 339 - -
Lja6g3144 344 SMART sant 13 63 IPR001005 -
Lja6g3144 344 SMART sant 66 114 IPR001005 -
Lja6g3144 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g3144 344 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja6g3144 344 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3144 Lja-Chr6 60046967 60048611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3144 1 344 MYB Transcription Factor Family AT4G21440 53.533 1.81e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g3144 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3144 K09422 - gmx:102660551 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3912 4 71874462 71876549 Lja6g3144 6 60046967 60048611 PCT