Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3140 ATGGGCGGTGAACAGCGAGAAACCACCGTCGAGCTCATCTCCTTCCTGATCTCCCTCTCTCACTCCATCAGAGTCTTCTCCGGAAGATGGCAGCTCATTCGCAACAAGCTCGAAGACCTCCGTTCTTCGCTCACCGCCGGCGACAGCCACTCACTCTCCGGCGTGTCCCCGGCAATAGCAACCACCGTGGAGGACTGCCACGAGCAGGCTCAGCGGTGTCTGGATCTGTCATACAGCGGGAAGCTTCTGATGCAGAGTGATTTGGACGCGATTTTGGGGAAATTGGAAGGGCACGTGAAGAAGCTCAACGAGATTCATAGGAAGGGTTTTCTCTCAAATGGGTATGCTGTGGTTGTCTCAAAACCTGGACTTGCTGCTTCCAAAGAGGACATGAGGTTCTACCTCAGAGACTTGCTTACCAGAATCAAGGTCGGTGATTGTGAAATGAAGAAGCAGGCTCTGGTGAATTTGTACGAGGTTGTTGTCCTGGATGAAAAGTATGTCACACTGATGCTTCAAATTGCTGAGTTTGTTCATGTGCTGTTGGATTTTCTCGGTTCCGGCGAGGCGGAGATTCAGGATGAGGCTATCAAGGTGGTTTCTGTTGTTGCAGGGTTTGATTATGGTAAAGGGGTTTTGGTTGCTGCTGGGGTGATTGCCTCGTTGATTCGGGTTTTGGAATGTGGGAGTGAGTTGGGGAAGGTTGGTGCTGCTAGGTGCTTGCAGAAGTTGACTGAGAATTCGGATAATGCTTGGTCTGTTTCATCTCATGGGGGTGTCACTTCCTTGTTGAAGATTTGTGACTCTGTGGATTGTAAAGGGGAATTGATTAACTCAGCGTGTGGGGTGTTGAGGAATCTTGCTGGTGTTGAAGAAATTAAGAGGTTTATGGTTGAGGAAAATGTGGTCTCCACGTTTATCAGGCTTGTGAGATCCACGGATGAAACAGTTCAGGTGAGTTCTGTGGATTTCATTCAAAACATTGCCTCTGAGGATGAATTGGTTAGGCAGATGGTGGTTAAAGAAGGTGGGATTCGTGTGTTCTTGCATGTTTTGGATCCTAAATTGACTTGTTCATCTAAAACAAGGGAGGTTGTGATGAGAGCTATTGAGAATTTGTGTTTTTCTTCACCTGGTTCTGTAAGTATTTTGATAACTTATGGCTTTGTGGATCAATTACTATATTATGTTAGAAATGGAGAAGTTTCAATTCAAGAGCTGGCGTTGAAAGTGGCAATTAGACTGTGTGGAACATCAGAGGAGGCTAAGAAAGCGTTGGGAGATGCGGGATTCATGGCAGAGCTTGTTAAGTTTCTAACTGCAAAATCATTTGAAGTTCGCGAAATGGCAGCTGAGGCACTCTCTGGCATGGTTATGGTGCCAAAAAATAGAAAAAGGTTTGTGCAAGATGATCAAAGTATTGCTCTTCTTCTGCAATTGCTGGAACCAAATGAGGGAAACTCAAATAACAAAAAGTTTTTGATCTCCATCTTAATGTCATTAACAAGCTGCAACAGTGGGAAGAAGAAGATTGTTAGTTCTGGATATGCCAAAAATATAGAGAGACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTTAGGAAGCTAGCCACAAACCGGTTCCGCAGTATGCTGAGTGGAATCTGGCATTCTTGA 1665 0.4541 MGGEQRETTVELISFLISLSHSIRVFSGRWQLIRNKLEDLRSSLTAGDSHSLSGVSPAIATTVEDCHEQAQRCLDLSYSGKLLMQSDLDAILGKLEGHVKKLNEIHRKGFLSNGYAVVVSKPGLAASKEDMRFYLRDLLTRIKVGDCEMKKQALVNLYEVVVLDEKYVTLMLQIAEFVHVLLDFLGSGEAEIQDEAIKVVSVVAGFDYGKGVLVAAGVIASLIRVLECGSELGKVGAARCLQKLTENSDNAWSVSSHGGVTSLLKICDSVDCKGELINSACGVLRNLAGVEEIKRFMVEENVVSTFIRLVRSTDETVQVSSVDFIQNIASEDELVRQMVVKEGGIRVFLHVLDPKLTCSSKTREVVMRAIENLCFSSPGSVSILITYGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAKSFEVREMAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEGNSNNKKFLISILMSLTSCNSGKKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLATNRFRSMLSGIWHS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3140 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 302 IPR000225 GO:0005515
Lja6g3140 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 554 - -
Lja6g3140 554 SMART arm_5 247 289 IPR000225 GO:0005515
Lja6g3140 554 SMART arm_5 290 330 IPR000225 GO:0005515
Lja6g3140 554 SMART arm_5 164 205 IPR000225 GO:0005515
Lja6g3140 554 SMART arm_5 419 459 IPR000225 GO:0005515
Lja6g3140 554 SMART arm_5 332 375 IPR000225 GO:0005515
Lja6g3140 554 SMART arm_5 206 246 IPR000225 GO:0005515
Lja6g3140 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 554 - -
Lja6g3140 554 SUPERFAMILY ARM repeat 136 535 IPR016024 -
Lja6g3140 554 Gene3D - 135 544 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3140 Lja-Chr6 60011597 60013654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3140 181 408 U-box Gene Family AT3G54790 24.017 1.80e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3140 - - gmx:100783537 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3907 4 71796188 71798624 Lja6g3140 6 60011597 60013654 PCT