Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3139 ATGTGTTTTCATTTTTTCAAAAATAATATATATGTTTGCATGAGATTCATTATCTGTTGTTATATGATGTTAATTTCATCATCTTCTCTGCTTCCTGTTGCGGTTACTGGTGGTGGTCTTTTGGCTTATGGCGCGATTGCTCCATCGGAAGCGGCGGTTACAGAGAGGAAGAAGGTGGTGGTGCTGGGAACTGGCTGGGCGGGTACAAGTTTTTTGAAGAATCTGAATAATCAGAAATATGAGGTTCAGGTTTTGTCGCCGCGTAACTATTTTGCTTTCACTCCTTTGCTGCCTAGCGTGACGTGCGGTACTGTTGAAGCCCGCAGCATTGTTGAACCCATTCGCAATATTTGCAGGAAGAAAAAGGTGGATGTACAATTCAATGAAGCAGAATGTGTCAAGATTGATGCCGAAAATAAGAAAGTTTATTGTCGATCTAACACGAACAATAATTTGAATGGGACAGAAGAATTCGCTGTGGATTATGACTACCTAATTATCGCTGTGGGCGCCAATGTCAATACATTTAATACTCCAGGAGTGGTGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAGAAGATTAGAAGAACAGTTATCGACTGCTTTGAGAGAGCGAATTTGCCCGATTTAAGTGAAGAAGAGAAAAAGAGAATTCTTCATTTTGCTATCGTTGGAGGTGGGCCAACTGGAGTGGAATTTGCAGCCTCACTTCATGACTTTGTCAATGATGATTTGGTCCGTTTATATCCTGGGATAAAAGATTTAGTTAAAATTACACTTCTGGAGGCCGGAGATCATATCTTGGGCATGTTTGACAAAAGAATCACTGCTTTTGCCGAAGACAAGTTTCAAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTGAAGGTTTCTGAAAAAGAAATTCACACTAAAGAACTGAAAAAGGGAGGAGAGATTACTGCAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGTACTCGTCCATTTATTAAAGATTTTATGAAACAGATTGGTCAGGCTAGCAGGCGTGCTCTAGCTACTGATGAATGGTTGAGAGTTGAGGGATGCAACAGTGTGTATGCTCTTGGTGATTGTGCTACCATAAACCAGCGAAAAGTCATGGAAGATATTACTGCAATCTTTAAGAAGGCTGACAAAAAGAGCACCGGAACACTCACGGTCAAAGAATTTCAAGAGGTCATGGATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAGAGTAAACATATGCGGAACATTGCTGATTTACTGAAGGAAGCCAAGGGCGATGATAAGAAAGAATCAGTTCAACTGAATATCGAGGAACTCAAAACAGCACTCTCCAAAGTGGATTCTCAGATGAAATTCCTTCCTGCTACAGCACAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAAGTGTTTTAACCGGATGGATGATTGTGAAAAGAATCCGGAGGGTCCTCTACGGTTCAGGGCAGAAGGTCGCCATCGCTTCAAGCCCTTCAGGTACAAGCACTTGGGTCAATTCGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGTCACAGCAGTCAATGGCTGTGGTATTCTGTTTATGCAAGCAAGCAAGTAAGCTGGCGTACAAGGGCATTGGTAGTTACAGACTGGACAAGGCGTTTTATTTTTGGGAGGGACTCAAGTCGCATATGA 1749 0.4277 MCFHFFKNNIYVCMRFIICCYMMLISSSSLLPVAVTGGGLLAYGAIAPSEAAVTERKKVVVLGTGWAGTSFLKNLNNQKYEVQVLSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNICRKKKVDVQFNEAECVKIDAENKKVYCRSNTNNNLNGTEEFAVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPDLSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNDDLVRLYPGIKDLVKITLLEAGDHILGMFDKRITAFAEDKFQRDGIDVKTGSMVVKVSEKEIHTKELKKGGEITAIPYGMAVWSTGIGTRPFIKDFMKQIGQASRRALATDEWLRVEGCNSVYALGDCATINQRKVMEDITAIFKKADKKSTGTLTVKEFQEVMDDICERYPQVELYLKSKHMRNIADLLKEAKGDDKKESVQLNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMDDCEKNPEGPLRFRAEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3139 582 SUPERFAMILY FAD/NAD(P)-binding domain 223 377 IPR036188 -
Lja6g3139 582 Gene3D - 48 413 - -
Lja6g3139 582 Gene3D - 423 581 - -
Lja6g3139 582 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Lja6g3139 582 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Lja6g3139 582 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 78 - -
Lja6g3139 582 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Lja6g3139 582 SUPERFAMILY FAD/NAD(P)-binding domain 56 275 IPR036188 -
Lja6g3139 582 PANTHER NADH DEHYDROGENASE 30 582 IPR045024 GO:0003954|GO:0006116
Lja6g3139 582 Coils Coil 444 464 - -
Lja6g3139 582 PANTHER NAD(P)H DEHYDROGENASE B2 30 582 - -
Lja6g3139 582 SUPERFAMILY EF-hand 373 469 IPR011992 -
Lja6g3139 582 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 384 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3139 Lja-Chr6 59998041 60004105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3139 27 582 Chloroplast and Mitochondria Gene Families AT4G21490 74.377 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3139 K03885 - gmx:100802661 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3905 4 71733998 71739881 Lja6g3139 6 59998041 60004105 PCT