Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3130 ATGGCGGCTTCTCCTTCCTCTTCTTCTTCCAAGCTCTGCTTCAATTCTCTCTGCAAGGAATTCAAGTCTGAAAGACCTAAGAAAGCTTGGAGACTTCGTACCGGAGACCTAGCCGAGCTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCAAATACTTCAGGTTGGAGGAATTGTGAGACTTGTGGCAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCCTACGTGTTGTTGGATCCTGGAGGAATTGAATGCTTTGCATGTGCCCGCAAAAGTATTATTTTGCCATCTAACGTGCCATGGCCCCAATCATTTCCCGTTCATAATCGTTTACCGGAGAGATTTAGAGACCTGTCTGCCAAAAGTTGGAACCAATTAGCTGGATCAGGTCCTGTACCGTGGAAGCAAGCACCCAGTCTCTTCAATTCAGCTTCTTCCTCTGACTTAGTTCCAGAAGTTCCCTCTGTAGTTGATTTATCAAATAGCTTCGACAAGATTTACGGCAATGAAAGGTTACCTGCTCCGTCCTTAGAAAAGAAAAATGAGGATTTTCCTGGAATATCAGTTAATTGGAATGTCAAGCTCGGTCCACGGGAAATGATGCTTATGAATGGAATGAGAAATGAGGACAAATCAAGTTCGTGTTTAAGCATGTGCTCACAGCCTCCTTCTATGAAGGAAGATTCATCTCCTCAACCATTTGGTTTGTCTATACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCTCCTCCAGGAAAGCAATTTAATGGCTCTATGCATTTATCGCTTGACTCATCTGGTGATGCTCAAGTTCGGAATGGGCGGCCTCGAGCAGATGCCCGGGGAAGAAATCAGTTACTGCCACGGTACTGGCCCAGGTGCACTGATCTGGAGCTGCAGCAAATATCTATTGATTCGAATTCTATAATTACTCCCTTGTTTCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAAAAGTGTGCTGAGACTTACTTCCCACCAATTTCTCAGCCGGAAGGACTGCCGCTTAAGATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTCTGGCCCAACAATAACAGCAGAATGTACGTTTTAGAGGGTGTCACTCCATGCATTCAGTCCATGCAGTTACAAGCAGGTGACACAGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTATGCCATCTGATCAGGATAATGACACTAATAAGAATGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCAGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAAAAAAGAGAAAGACCAGCATATTGGGTTCAAAGAGTAAACGTCTAAAAATTGAAAGTGAGGATATGATAGAGCTGAAAATTACATGGCAAGAAGCTCAAGGCCTGCTCCGACCCCCTCCTAACCTTATCCCAAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTTGGAAAGCCAACAATTTTCACCAACGATAATGATGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTATGAAGTGGCGCAAATTGCCAGCGAACGCTCTTCTTCCATCAAAATGGACATGTTCTGATAATGCATATGATATAGCAAGATCTTCTTGCTCAGCTCCTCAAGAACTGACAGCGGAACAGCTTGAAAATTTGCTACCCTCTTGTAATTCAGTTTCCAAGAAGATGAAGGCCACCAAGCTGGATCCTGACAATGCTGAAGCTTTGGAGGGACTTGACACACTTGCAAATCTAGCTATTTTGGGAGAGGGTGAGGCACTCCCATCATCCGGCCAGGCCACAACTAAACACCCGCGTCATAGACCCGGCTGCTCTTGCATTGTCTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACGTGTAATGTCTGCTTGACAGTGAAGCGTCGTTTTCGCACCCTCATGCTACGGCGGGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAGCACGTAAAAAGCAGCAGCAGCAGCAACATCCTCAGCCATTACCGACGTCTGAAATTTTGCTTTATGATGATTCCTTACCTTGCAACACCGGTGATAGTAGTAGCCCAAACCAGAACAAAGAGGGCAATGATGGTTCTGATGACGATCCTAACCGGATAAAATCATCCGTTTCGCCATTCAAAGGCCAGATTGACCTCAATATCCAGCCCGAGCGAGAAGAGGAGTTATCACCGGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCCAATGATAGGTATCTCCCCAAGCATCAGACTGTGTTGAACTCCGGTACCGGAGATTCATCAGGTAGTCAGTCACAGCAGATAGGAGATGGAGTGAGGGAAGAGAAACATAGTAATGGTGTTGTTGCACATGGCAGTAGTAGTCATAGTACGGATAAGGAACATACCCAATCTTTACCTATGAATGTGTGA 2649 0.4496 MAASPSSSSSKLCFNSLCKEFKSERPKKAWRLRTGDLAELCDRCGSAFEEGRFCEIFHSNTSGWRNCETCGKRIHCGCIVSSHAYVLLDPGGIECFACARKSIILPSNVPWPQSFPVHNRLPERFRDLSAKSWNQLAGSGPVPWKQAPSLFNSASSSDLVPEVPSVVDLSNSFDKIYGNERLPAPSLEKKNEDFPGISVNWNVKLGPREMMLMNGMRNEDKSSSCLSMCSQPPSMKEDSSPQPFGLSIPYSSPNERNGQIGVTGSHPQQTPPPPGKQFNGSMHLSLDSSGDAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSIITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAMPSDQDNDTNKNGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLKKRKTSILGSKSKRLKIESEDMIELKITWQEAQGLLRPPPNLIPSIVVIEGFEFEEYEDAPVLGKPTIFTNDNDGEKIQWAQCEDCMKWRKLPANALLPSKWTCSDNAYDIARSSCSAPQELTAEQLENLLPSCNSVSKKMKATKLDPDNAEALEGLDTLANLAILGEGEALPSSGQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETARKKQQQQQHPQPLPTSEILLYDDSLPCNTGDSSSPNQNKEGNDGSDDDPNRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDANDRYLPKHQTVLNSGTGDSSGSQSQQIGDGVREEKHSNGVVAHGSSSHSTDKEHTQSLPMNV* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3130 882 MobiDBLite consensus disorder prediction 829 848 - -
Lja6g3130 882 MobiDBLite consensus disorder prediction 219 266 - -
Lja6g3130 882 ProSiteProfiles Zinc finger CW-type profile. 563 613 IPR011124 GO:0008270
Lja6g3130 882 SUPERFAMILY DNA-binding pseudobarrel domain 334 437 IPR015300 -
Lja6g3130 882 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Lja6g3130 882 SMART B3_2 337 438 IPR003340 GO:0003677
Lja6g3130 882 MobiDBLite consensus disorder prediction 439 458 - -
Lja6g3130 882 CDD B3_DNA 335 436 IPR003340 GO:0003677
Lja6g3130 882 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Lja6g3130 882 MobiDBLite consensus disorder prediction 716 732 - -
Lja6g3130 882 Coils Coil 712 737 - -
Lja6g3130 882 MobiDBLite consensus disorder prediction 440 456 - -
Lja6g3130 882 MobiDBLite consensus disorder prediction 860 882 - -
Lja6g3130 882 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 811 - -
Lja6g3130 882 MobiDBLite consensus disorder prediction 716 815 - -
Lja6g3130 882 MobiDBLite consensus disorder prediction 755 769 - -
Lja6g3130 882 Gene3D - 315 441 IPR015300 -
Lja6g3130 882 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 8 811 - -
Lja6g3130 882 Pfam CW-type Zinc Finger 568 610 IPR011124 GO:0008270
Lja6g3130 882 MobiDBLite consensus disorder prediction 219 306 - -
Lja6g3130 882 Gene3D - 567 620 - -
Lja6g3130 882 MobiDBLite consensus disorder prediction 829 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3130 Lja-Chr6 59939767 59950261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3130 292 720 B3 DNA Binding Superfamily AT4G32010 57.834 1.59e-162 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja6g3130 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3130 - - gmx:100782114 1529.61