Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3129 ATGAATGACCTATTCTCAGGCTCCTTCAAGAAATACACTGATTTGAAGGAGCAGGCCTACCTTGATGATGTGGAGGCTGGGAAGGAAACTGTTAACCTTGACAAATTCTTTGAAGATGTGGAGAATGTGAAAGAAGACATGAGAGTGGTTGAGAAGCTCTACAGAAAATTGCAAGAGGCTAATGAAGAGAGCAAAATTGTCCACAATGCTAAAACAATGAAGGACCTTCGAGCCCGAATGGACAAAGATGTTGAGCAGGTTCTCAAACGAGTGAAGCTCATCAAGGGAAAGCTTGAAGCATTGGAACGTTCCAATGCTTCCAATAGAAACATTCCAGGGTGTGGTCCTGGTTCTTCAGCGGACAGAACCAGGACCTCAGTGGTGAGTGGATTGGGGAAGAAACTCAAGTCCATGATGGATGATTTTCAAGGATTCAGAGCAAGGATGCAAGAAGAGTACAAGGAAACAGTTGAAAGAAGGTACTTCACCATCACAGGAGAAAAAGCTGATGAAGAAACCATTGAGAATTTGATATCAAGTGGAGAGAGTGAGAGTTTTCTTCAGAGAGCTATCCAGGAACAGGGTAGGGGTCAGATTATGGACACCATATCAGAAATTCAAGAGAGGCATGATGCTGTTAAGGAAATAGAGAAGAACTTGATTGAGCTTCATCAAGTGTTTTTGGACATGGCTGCACTTGTGGAGTCTCAGGGTCAACAACTCAACAACATAGAGAGTCATGTGGCGCATGCTAGTTCTTTTGTTAGACGAGGCACGGATCAACTTCAAGAAGCTAGAGTGCACCAGAAGAGTTCCAGGAAGTGGACTTGCTACGCCATTCTTCTTGGTCTTGTCCTTGTCATTGTGCTCCTTTTTCCTCTCTTGACATCCCTTCTACCACACTTGTTGCGATGA 915 0.4393 MNDLFSGSFKKYTDLKEQAYLDDVEAGKETVNLDKFFEDVENVKEDMRVVEKLYRKLQEANEESKIVHNAKTMKDLRARMDKDVEQVLKRVKLIKGKLEALERSNASNRNIPGCGPGSSADRTRTSVVSGLGKKLKSMMDDFQGFRARMQEEYKETVERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQEARVHQKSSRKWTCYAILLGLVLVIVLLFPLLTSLLPHLLR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3129 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Lja6g3129 304 CDD SNARE_syntaxin1-like 202 264 - -
Lja6g3129 304 Pfam SNARE domain 240 291 IPR000727 -
Lja6g3129 304 Coils Coil 84 104 - -
Lja6g3129 304 Coils Coil 40 70 - -
Lja6g3129 304 CDD SynN 33 190 IPR006011 GO:0016020
Lja6g3129 304 Gene3D - 33 160 - -
Lja6g3129 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja6g3129 304 SMART tSNARE_6 198 265 IPR000727 -
Lja6g3129 304 Gene3D - 194 295 - -
Lja6g3129 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lja6g3129 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lja6g3129 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Lja6g3129 304 PANTHER SYNTAXIN 10 297 IPR045242 -
Lja6g3129 304 PANTHER T-SNARE-RELATED 10 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3129 Lja-Chr6 59937506 59938420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3129 1 303 SNARE and Associated Proteins AT1G61290 78.878 0.0 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3129 K08486 - gmx:100818999 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3891 4 71592504 71593421 Lja6g3129 6 59937506 59938420 PCT