Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3122 ATGAAGTTCAACCCCAGAGTCTCCAGCAGCAGGCGAAAGAGCCGCAAGGCTCATTTCACCGCCCCATCGAGCGTCCGCCGCGTCCTCATGAGCGCGCCGCTCTCCGCCGACCTGCGCTCGAAGTACAACGTGCGCTCAGTTCCGGTGAGGAAGGAGGACGAGGTCCAGGTGGTGCGTGGAACCTACAAGGGAAGAGAAGGGAAGGTGACTCAGGTGTACAGGCGCAAATGGGTGATCCACATCGAGCGCATCACTCGTGAGAAGGTGAACGGCTCCACTGTCAACGTTGGTATCCATCCTTCCAAGGTGGTGGTCACCAAGCTCAGGCTCGATAAGGATCGCAAGGCGCTTCTCGACCGCAAGGCTAAGGGACGTGCCGCTGCTGATAAGGAGAAGGGTACCAAGTTTGCTCCTGAGGATATCATGCAAACTGTTGATTAG 441 0.576 MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADLRSKYNVRSVPVRKEDEVQVVRGTYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLRLDKDRKALLDRKAKGRAAADKEKGTKFAPEDIMQTVD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3122 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lja6g3122 146 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g3122 146 MobiDBLite consensus disorder prediction 122 137 - -
Lja6g3122 146 PANTHER 60S RIBOSOMAL PROTEIN L26-1 1 146 - -
Lja6g3122 146 Pfam KOW motif 53 82 IPR005824 -
Lja6g3122 146 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lja6g3122 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Lja6g3122 146 SMART kow_9 48 75 IPR005824 -
Lja6g3122 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lja6g3122 146 CDD KOW_RPL26 53 105 IPR041988 GO:0003723
Lja6g3122 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 146 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lja6g3122 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lja6g3122 146 Gene3D - 1 143 IPR014722 -
Lja6g3122 146 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3122 Lja-Chr6 59873189 59874091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3122 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 84.247 4.01e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3122 K02898 - gmx:100775705 240.35