Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3114 ATGGGGACGGAGGAGGGGAATGGGAAATGGGGCACCTGGGAGGAGCTCATCCTCGGTGCGGCCGTTCTCCGCCACGGAACCCAAGACTGGAAGGTGGTCGCCGGCGAGCTCCGAGTCCGAACCCCTTGTCCTGATGCTTTTACTCCAGAGAATTGTGAAGCCAAGTATGAAGAATTTCTAAAGCGGTATTCTGGGAGCACGGCTTGGTATGAGGAGCTTAAGAAGGCTAGAATAGCAGAGCTGAAGAGAGCTCTGGAGCAATCTGATAAAAAGATTGGGGCTCTTGAGTCGAAGCTTGAATCCCTCAAGGCTGAGAAGAATGAAAAAATAGATGATCGTCATGTTGAAAATGGCTCAGGAAGTCCAGCATCACATGAACCTTCACAGAAGTTGGAGAGAGTTGAATCTTCCAATAAAGAGCTTTCGAAGGATGGGCTATCTGCTGGGAGTTTCACGCATGAAACCAGGACAACAAACTGGTCTCCTGAACGCCAGGTTCCAGCCGAGGATACCGAGACTAAGCCTGAAGCTTCACACTCTAGTGAGCAGGTTAAAGTTTTGAATGTAGATAACTTGACAAATACTATTTATGAGGGACAAGTAGGAAGTCTGAAGAAAAGAAGAGGAAAGAGGAAGAGGAAGGATTGTGGCAGAAATATTAAGGAAGCAGCAAGTATGGGAGAAAGTGACTTATTGGATTCAGCTGATGTAGTGTCCTTGTGTAAAGAAAGTTCTACCAGCAACTATGATGAAGTTGCCAAGTCTTCTGGTGTAGATGATCAAATCAAGAACTTGAAAAAGACTGGGGCAGGAGAAATAATGGAGATGTTAGATTCTATTTTCGAAACTCAAGGAGCCTCCGCCTTCCGACGCAGACTTGATAGTCAGAAGAGAGGAAAGTACAAGAAGATGATCCGGCGGCACATGGACTTCGACACCATAAGGTCAAGGATTAGCGACAAAACAATCAAGTCAGCTAGAGAACTTTTCCGGGACCTGCTGCTACTGGCTAACAATGCTCTAGTCTTCTACTCCAAGAGCACTCGCGTGTATAAATCTGCTATGCTGCTAAGAGACCTTGTCACCAAAAAAATGAGGGAGACTTCCAAGGGTATTAGCAGCAGCAAAGTCACCACCACCTCCGAGGCTAATGAGTCTTCAAAATTACCTGTGCAAAATCCTCGTGTGAAACCAAGAAGTGTACGCCCGGGTAACAGAAAAATTGTTGCTAAGGCAACTGGTGGCAACAACTCTGCATCTGGGGTGTCTGATGGAGCTAAGAAACCCTGTAAAGTTGATTCTCCTTCCCCAGTGGAATCCTTAACTGTTAAGAAGAAAGCTTTTGGTCGACCGAAAAAGGTTGGACGTGGAACCGCAGGACCAAAGCCTGCAACACCATTGAAAGGGAAGAAAAGAGTTAGAACAAAGGGATAG 1434 0.463 MGTEEGNGKWGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYSGSTAWYEELKKARIAELKRALEQSDKKIGALESKLESLKAEKNEKIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHETRTTNWSPERQVPAEDTETKPEASHSSEQVKVLNVDNLTNTIYEGQVGSLKKRRGKRKRKDCGRNIKEAASMGESDLLDSADVVSLCKESSTSNYDEVAKSSGVDDQIKNLKKTGAGEIMEMLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLLLANNALVFYSKSTRVYKSAMLLRDLVTKKMRETSKGISSSKVTTTSEANESSKLPVQNPRVKPRSVRPGNRKIVAKATGGNNSASGVSDGAKKPCKVDSPSPVESLTVKKKAFGRPKKVGRGTAGPKPATPLKGKKRVRTKG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3114 477 Coils Coil 71 112 - -
Lja6g3114 477 Pfam Bromodomain 275 354 IPR001487 GO:0005515
Lja6g3114 477 MobiDBLite consensus disorder prediction 103 185 - -
Lja6g3114 477 MobiDBLite consensus disorder prediction 367 477 - -
Lja6g3114 477 SUPERFAMILY Bromodomain 273 368 IPR036427 GO:0005515
Lja6g3114 477 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
Lja6g3114 477 CDD Bromodomain 272 365 - -
Lja6g3114 477 MobiDBLite consensus disorder prediction 371 393 - -
Lja6g3114 477 CDD SANT 9 60 IPR001005 -
Lja6g3114 477 MobiDBLite consensus disorder prediction 103 119 - -
Lja6g3114 477 Gene3D - 263 388 IPR036427 GO:0005515
Lja6g3114 477 MobiDBLite consensus disorder prediction 141 166 - -
Lja6g3114 477 SMART bromo_6 266 370 IPR001487 GO:0005515
Lja6g3114 477 ProSiteProfiles Myb-like domain profile. 2 60 IPR001005 -
Lja6g3114 477 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 8 476 - -
Lja6g3114 477 PANTHER BROMODOMAIN PROTEIN 8 476 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g3114 Bromodomain 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3114 - - gmx:100793951 676.781