Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3112 ATGGGCTATACTAATTCGGTCTTGCATGTTCGAATCTTTGTCATCTCCATGGTGATTCTTACAGGGACTTTCTGTCTTGGAGAGACAGACCCGGTTGACGTTGCAGCAATCAGTAGTCTATATGTTGCTCTGGGCTCACCACCTCTTCTAGGGTGGAAGGCAGTGGGAGGAGACCCGTGTTTGGAACTGTGGCAAGGAGTGGCTTGTGTCTTCTCCAACATTACTGCCATACGGCTTGGAGGCATGAATTTGGGTGGAGAGCTGGGCACTAATTTGGATTTTCCATCCATCATAGAAATTGATCTTAGTGACAACCATATTGGAGGGGCCATTCCATTCACTTTGCCTCCTACTCTGAGGAGCTTGTCTCTTTCAAAAAATCTGTTAAATGGAAGCATTCCAGATGCCTTTTCCTTACTAACCCAGTTATCAAATTTGGGTTTGGCGAGTAACAACTTGAGTGGTCAACTACCTTCCTCAATGGGGAGTTTATCATCTCTTACCGCATTAGAGTTGCAGAACAATCAACTTTCTGGAACCCTTAATATTTTGCAAGACCTTCCTATACAGAATCTGGATATAGAGAATAATTTGTTCTTTGGGCCAATTCCTCCAAAATTGTTGACTATCCCGACTTTCAGAAAAGATGGGAATCCGTTTAATACAACTATTATTCCATCACCTCCTGCTGCAGCCCCTTCACTGGTAGATATGGCTCCATCCCCTGAAGGATCACCTTGGAATGGGGCAAATAGTCCTTTTTCCCTGACAGCACCAATTCATGCTAGTTCTAAGAAGTCTTTCATAGCTAAGAATGTCATTTGGATTGCTGCGGCAGGTTTCTCGATATTTATTGCATTGGGAATATGTCTTTTTATGTTGCTGTGCTTCAAGAGAAGGCCAGAAAAGAAAAACTCTAAGAAACTTGATGTGGGTGTTTATGTGAAGCCTTTGAGTAAACCTACATGCAGTGACACAGTTTCTGAAGTAACTGATCCAGAAGAGAAAGGGCAGGGTTATGGGCTTTCACACCTGCAGCCACCACCACATTCTCTCCCAACCATTCCTTGTGAGAAGGTCATCATCAATCCGGCTATAACTACCAAAGTAACCAATGGACAAGTTATGACAAGTTCTATCAAAGTGTATACTGTTGCATCACTTCAGCAATATACAAATAGCTTTGCCCAGGAAAATTGTATTGGGGAAGGCACACTTGGGTCTGTTTATAGGGCTGAGCTCCCTGATGGAAAGCTATTGGCAGTGAAGAAACTGAACGCTACTGCTTCCATGGACCAGAATGATGAACAATTTCTTCAATTGGTATCCAGCATCTCAAAAATTCAGCATGCTAATATTGCAAAGCTTGTCGGCTACTGTGCTGAGTATGGCCAAAGACTCCTTGTATATGAGTATTACAGTAATGGGACCCTACATGATGCTCTGCATGGGGATGATGAACACTGTATCAAACTTCCATGGAATGCACGCATTAGGGCCGCACTTGGAGCTGCAAGAGCTTTAGAGTATCTGCATGAGAGCTTTCGGCCGCCTATTGTGCATCGGAATTTCAGATCCGCTAATGTTCTCCTGAATGAAAAGTTGGAAGTATTCGTTTCTGATTGTGGATTGGGTCCTTTACTATCTTCTGGCTCTGCTGGTCAGTTATCAGGACGCCTCCTCACATCTTATGGTTACAGTGCTCCGGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGAGTCATAATGCTAGAACTCCTCACTGGAAGAAAATCCTATGACAGGTCACTGCCTCGTGGGGAGCAATTTTTGGTCAGATGGGCAGTTCCTAAACTTCACGACATCGATGCATTGTCAAGAATGGTTGATCCTTGCTTAAACGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCGGATATTGTTTCTTCATGTATACAGCGTGAACCTGAATTCCGTCCAGCTATGTCTGAAATTGTTCAAGATCTGTTGCTAATGCTGTAA 2022 0.4352 MGYTNSVLHVRIFVISMVILTGTFCLGETDPVDVAAISSLYVALGSPPLLGWKAVGGDPCLELWQGVACVFSNITAIRLGGMNLGGELGTNLDFPSIIEIDLSDNHIGGAIPFTLPPTLRSLSLSKNLLNGSIPDAFSLLTQLSNLGLASNNLSGQLPSSMGSLSSLTALELQNNQLSGTLNILQDLPIQNLDIENNLFFGPIPPKLLTIPTFRKDGNPFNTTIIPSPPAAAPSLVDMAPSPEGSPWNGANSPFSLTAPIHASSKKSFIAKNVIWIAAAGFSIFIALGICLFMLLCFKRRPEKKNSKKLDVGVYVKPLSKPTCSDTVSEVTDPEEKGQGYGLSHLQPPPHSLPTIPCEKVIINPAITTKVTNGQVMTSSIKVYTVASLQQYTNSFAQENCIGEGTLGSVYRAELPDGKLLAVKKLNATASMDQNDEQFLQLVSSISKIQHANIAKLVGYCAEYGQRLLVYEYYSNGTLHDALHGDDEHCIKLPWNARIRAALGAARALEYLHESFRPPIVHRNFRSANVLLNEKLEVFVSDCGLGPLLSSGSAGQLSGRLLTSYGYSAPEFESGSYTQQSDVFSFGVIMLELLTGRKSYDRSLPRGEQFLVRWAVPKLHDIDALSRMVDPCLNGAYPMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLML* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3112 673 Gene3D Ribonuclease Inhibitor 33 237 IPR032675 -
Lja6g3112 673 SUPERFAMILY L domain-like 36 207 - -
Lja6g3112 673 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3112 673 Gene3D Phosphorylase Kinase; domain 1 359 472 - -
Lja6g3112 673 Gene3D Transferase(Phosphotransferase) domain 1 473 673 - -
Lja6g3112 673 SUPERFAMILY Protein kinase-like (PK-like) 375 670 IPR011009 -
Lja6g3112 673 PANTHER LEUCINE RICH REPEAT KINASE 2 355 673 - -
Lja6g3112 673 PANTHER LEUCINE RICH REPEAT KINASE 2 135 315 - -
Lja6g3112 673 PANTHER LEUCINE RICH REPEAT KINASE 2 9 148 - -
Lja6g3112 673 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 355 673 - -
Lja6g3112 673 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 135 315 - -
Lja6g3112 673 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 148 - -
Lja6g3112 673 Pfam Protein tyrosine and serine/threonine kinase 398 669 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3112 Lja-Chr6 59785458 59794343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3112 23 673 Strubbelig Receptor Gene Family AT4G03390 50.541 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja6g3112 PK_Tyr_Ser-Thr 8.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3112 - - gmx:100793423 993.416