Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3105 ATGGCGGATTTGGAATTCGACTTCCCGCCGGCGCCGTTTCAGGACGGCGCCGCCACCTCCGATGACGAAAGGCTTGCCATGGATCTTGAATCCATCCTCAGCGTTCTCGATGAAGATCGCGATCCTTCCGAGAGTAGTCATGAAGATTCGTCCTTGAAAAATGTTTCACCTGGTGAATATTGCATCAATGATAATTTGCTACTTCAGAATGGGAATTTTGTGGTTGACCGTGAACATGAAAACCCGGGAAATTCATCACAGTCTTGCTCTTCCCCAAATGGTTACAAGGGCTCATTCTCTTTGGTTGAAAGTGATGAGGTTTACCACCACGGAGAAAGGACAGGAGTTTCTAAATGTGCCATACCTGTACACAGGGTGGACGCAAAGGCAAAATCAAATTACGTAGCTGTTTACAGAGATAATTTGAATGTGAGTCAGTGGAAGGGTGAAAATGATGGCCTAATCCAGCATGGAGGAGATGATGTAGAATCTAAATATGCTTCACACACCTCTATCGTTGAGAATGTTGACGTAACTCTTGACAATTACGGATCATTTTATAAAGACATAATTGAAGATTCTATGCAGCAGGAAAATGACTCCTGTACATCTTTTGAAATGTCATTTATGGATGCTGATAGATCTACACCTGCTGCAACTCCAATTGATTCTACTATTTTTCATGGTTCCAATATTCCCAGTGATTTTGGTGCCTACTATGCATCTTTGAATTGTTACCAGGGTATGGACAATAGACCTTTTGTTCCCCACACTGATGGTTGGTTGGCTAATGGGGGCTGTCCTCAAGTTTGGAAAAATGAAGAAATCATGGGGAACATAGAGGTTACAAGAATGGAGTCCTCCCCTGATTCAACACATGCGTGTAGTGCCATGCATTCCAGCACTACGGGTGGAATATCTTTTCATGATAATCAATTTATGTTAGCAGACACTGAATATTCTTCATTTTTTCCGGGTAATGTTCTCATTGAAAACAGTGCATCAGTGCAACTTCCCACCGGTGCGTCATACATCTCAAGTGAAGGTCCATCGCTTCATGTCAAAGCTGAAAGAGATGAACTGATTATGCCGTACCAATATTCTTTTCACAGCGATGATGTCAAGTTCAATGCAGGTCAAGAGGTGAAACAATTACCTGGCATTTTCCCTTCTATTGGATGTCAGAGTTATGATTTTGTCAAAGGCGAGGCTAGTGATACAATTATAACAACTGAGAAAGCCAATTATTATGAAGACATTATAGATGAAAGTGCTTATAAATTTCCAGGAAATATTGGAAATTTGAATTCAAAATCCTTACATAAGTCTTTGTCTATTTCCCAGGCACCAGTTGCCACTGGGAAGCAATATAGTTTTGCTATGAGTGAAGAAGAAGGTAAACCAGTCCATAATAGAAGTGTTGGTTCTAAAGGAATTACTGAAACATCAAAAATTGAGGATGACTCTGATGTTTGCATAATTGAACACATCAGCCACCCTGCTCCAATAAGTCGGTCTGCAGAACTTGGGAATCCCCCTAATATGTCACGATCTTCTGGATCTGGTTATACCCAACCTCGTATGGTGGGAGGCACAAGACCAAAGACACGTGATGAACAATACATATTACGTGTTGCTTTGCAGGATTTATCTCAGCCGAAGTCAGAAGTTAGTCCACCAGATGGGTTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGCTGTGGGGGAATTCTTGCTGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCATTAATATTAAAGGAAAAGCCTCCATTGCTTAATACATGCAACAACATACGAAAAAATGAATTAGAAGCTTTGAATTTGGATGATGATGACCCGCTTCCTGAGAATGGTGTAGTGAAGAAAGAATCTGATATCTGTCAGGACACGTCTAGTAGAAATTCAATCACAAGCATGAATTTGGCTGTGCATGCTAAGGGAAGGCCATCTGCCGGAACCCTGGTTGTTTGTCCAACTAGTGTCCTACGACAATGGGCTGAGGAGTTGAATAATAAGGTAACCTGCAAAGCAAAGCTCTCTGTGCTAGTGTACCATGGAAGCAACCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTCCTGACAACTTATTCAATTGTCAGCATGGAAGTCCCTAAGCAGCCTCTGGTTGACAAAGAAGATGAAGAAAAAGGAATTTATGAAGGTCATGCTGCACCAAGTAAGAAAAGGAAATGCCCTCCTACTTCGAGTAGAAGTGGCAAGAAGGGATTAGACAATACGATGCTTGAGGCGGCTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTCCTGGACGAGGCCCAAAGTATAAAGAATCACAGGACTCAAGTTTCAAGAGCCTGTTGTGGTCTTCGAGCAAAGCGCAGATGGCTCTTGTCTGGGACTCCCATACAAAATTCAATTGATGATCTCTATAGTTACTTTAGATTTTTAAGATATGATCCGTATGCTGTGTACACATCATTCTGTTCCACAATTAAGCTCCCTATCAGCAGAAGTCCATCAAAGGGGTATAGAAAGCTACAAGCCGTCTTAAAGACAATAATGTTGCGTAGGACAAAGGGCTCACTTCTTGATGGTGAACCTATCATTTCCTTGCCACCTAAATCCGTAGAGTTGAAGAAAGTGGAATTTTCAAAGCAGGAGCGTGATTTCTATTCAAGGCTAGAGGCTGATTCACGTGCTCAGTTTCAGGAATATGCTAATGCTGGAACTGTGAAGCAAAATTATGTCAACATTCTATTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCATTACAATTCTAACTCTCTGTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAGAAACAGTTATCCCTTGTACGATGTTTAGAGGCTTCCTTGGCCCTTTGTGGTATCTGCAATGATCCTCCTGAAGATGCAGTTGTCTCCGTATGCGGTCACGTTTTCTGTAATCAGTGCATTTGTGAACATCTTACCGGTGATGACAATCAGTGCCCTTCTACTAATTGCAAAACTCGACTGAGCATGACTTCAGTGTTTAACAAAGCCACCCTAAACAGTTCTCTATCTGACCAGTCATGTGATCATTCACCTGGTTCTGTGGTGGAGGAATCTGAGCCTTGTTCTCTTTCTCAGCCACATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAACCACATGGCCATACCTCCCCAAAACATTTTGTGCAAGGCACTTTGAGGGAAAGTACTTACTGCTCTGGGAGCTCCTCTTGTGCTGACAATGGGAAATCAAATGATTTTTCTGAGAATCAAAGTGTCTTTACCGAGGGAAGTTCTAATGATTCAGTTAGTTCTGTAGGAGGGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGACTTGCTTGAAGCGTGTCTTAAGAATTCTTCAATTAAGTACAGAAGGCTTGACGGAACGATGTCGGTTATTGCAAGAGATAAAGCTGTCAAAGATTTTAACACACTCCCTGAGGTATCTGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCCACCACTGAAGATCAAGCGATAGACAGAGCTCATCGCATTGGACAGACTCGTCCTGTTACAGTTTTGCGGTTAACTGTAAGGGATACGGTTGAAGACCGTATTTTAGCTCTACAGCAAAAGAAGCGAAAGATGGTTTCATCTGCATTTGGAGAGGATGGAAGTGGTAGTGGTCAAAGCCGTCTTACAGTGGATGATTTGAAATACTTGTTCATGATGTGA 3954 0.4221 MADLEFDFPPAPFQDGAATSDDERLAMDLESILSVLDEDRDPSESSHEDSSLKNVSPGEYCINDNLLLQNGNFVVDREHENPGNSSQSCSSPNGYKGSFSLVESDEVYHHGERTGVSKCAIPVHRVDAKAKSNYVAVYRDNLNVSQWKGENDGLIQHGGDDVESKYASHTSIVENVDVTLDNYGSFYKDIIEDSMQQENDSCTSFEMSFMDADRSTPAATPIDSTIFHGSNIPSDFGAYYASLNCYQGMDNRPFVPHTDGWLANGGCPQVWKNEEIMGNIEVTRMESSPDSTHACSAMHSSTTGGISFHDNQFMLADTEYSSFFPGNVLIENSASVQLPTGASYISSEGPSLHVKAERDELIMPYQYSFHSDDVKFNAGQEVKQLPGIFPSIGCQSYDFVKGEASDTIITTEKANYYEDIIDESAYKFPGNIGNLNSKSLHKSLSISQAPVATGKQYSFAMSEEEGKPVHNRSVGSKGITETSKIEDDSDVCIIEHISHPAPISRSAELGNPPNMSRSSGSGYTQPRMVGGTRPKTRDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCCGGILADDQGLGKTVSTIALILKEKPPLLNTCNNIRKNELEALNLDDDDPLPENGVVKKESDICQDTSSRNSITSMNLAVHAKGRPSAGTLVVCPTSVLRQWAEELNNKVTCKAKLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKEDEEKGIYEGHAAPSKKRKCPPTSSRSGKKGLDNTMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVSRACCGLRAKRRWLLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKLPISRSPSKGYRKLQAVLKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSKQERDFYSRLEADSRAQFQEYANAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNSNSLWKSSVEMAKKLPQEKQLSLVRCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPSTNCKTRLSMTSVFNKATLNSSLSDQSCDHSPGSVVEESEPCSLSQPHDSSKIKAALEVLQSLSKPHGHTSPKHFVQGTLRESTYCSGSSSCADNGKSNDFSENQSVFTEGSSNDSVSSVGGKAIVFSQWTRMLDLLEACLKNSSIKYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVSSAFGEDGSGSGQSRLTVDDLKYLFMM* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3105 1317 CDD DEXDc_SHPRH-like 568 889 - -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 746 778 - -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 746 763 - -
Lja6g3105 1317 SMART ultradead3 564 868 IPR014001 -
Lja6g3105 1317 ProSiteProfiles Zinc finger RING-type profile. 1005 1041 IPR001841 -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 1 56 - -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 503 533 - -
Lja6g3105 1317 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1153 1312 IPR001650 -
Lja6g3105 1317 Gene3D - 904 1316 IPR027417 -
Lja6g3105 1317 CDD SF2_C_SNF 1162 1269 - -
Lja6g3105 1317 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 457 1316 - -
Lja6g3105 1317 SMART ring_2 1005 1043 IPR001841 -
Lja6g3105 1317 SUPERFAMILY RING/U-box 1002 1050 - -
Lja6g3105 1317 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 851 IPR014001 -
Lja6g3105 1317 Pfam Helicase conserved C-terminal domain 1160 1259 IPR001650 -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 21 48 - -
Lja6g3105 1317 Gene3D - 771 902 IPR038718 -
Lja6g3105 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 889 IPR027417 -
Lja6g3105 1317 SMART helicmild6 1176 1259 IPR001650 -
Lja6g3105 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 998 1056 IPR013083 -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 1065 1087 - -
Lja6g3105 1317 ProSitePatterns Zinc finger RING-type signature. 1020 1029 IPR017907 -
Lja6g3105 1317 Pfam SNF2-related domain 588 966 IPR000330 GO:0005524|GO:0140658
Lja6g3105 1317 Pfam Zinc finger, C3HC4 type (RING finger) 1005 1041 IPR018957 GO:0046872
Lja6g3105 1317 Gene3D - 659 759 IPR038718 -
Lja6g3105 1317 Gene3D - 538 628 IPR038718 -
Lja6g3105 1317 MobiDBLite consensus disorder prediction 509 526 - -
Lja6g3105 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 1316 IPR027417 -
Lja6g3105 1317 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 457 1316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3105 Lja-Chr6 59722031 59731469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3105 491 1316 RAD5 or RAD16-like Gene Family AT1G61140 62.204 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja6g3105 SNF2_N 1.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3105 - - gmx:100805307 1738.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3105 6 59722031 59731469 Lja6g3105 6 59722031 59731469 ECH
Lja4g3872 4 71381672 71389459 Lja6g3105 6 59722031 59731469 PCT