Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3101 ATGATGTATAGCATGGATTCATCTTCTTCTCAGCATCCAAACCTCCCTCCAGGTTTTCGCTTCCACCCTACAGATGAAGAACTAGTTGTTCACTACCTTAAAAGAAAAGCAGATTCTGCTCCTCTTCCTGTTGCCATAATTGCTGATGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAAGCAGCGTTTGGTGAGCGAGAGTGGTACTTTTTCAGTCCAAGGGATAGGAAATATCCAAACGGGGCAAGGCCTAATAGGGCTGCTACTTCAGGGTATTGGAAAGCTACAGGAACTGACAAGCCTATCATAGCTTCTGATGGGAACCACAAAGTTGGAGTTAAGAAAGCTCTTGTTTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACTAATTGGATTATGCATGAGTACAGGCTCCCCGAAAATTCATTGAATTCATCATCTCTGGCTGCTGCTCCTGCACATGGTAGAAAGAAGAATTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATTTACATAAAAAACAACAGTACAAGCTTCCCAAGGCTACCATTGATGGAGCAGGACAAGGAGGTTTCTGATTCTATGCTACCAACGATGTCAATGGCTAAAGATGAGAATTGTAAACCAACATCTTCTTCAAAAAGTGCAAGTTATGGACCTATGGGACTGGAAAACGATCATGACAACTTTTTCCTTGGAATATTAGCAGCTGAACAGAGCATGCAAAATGGTTCAAACTCAGACTCACATCAAGTTATCTCTTCAGACACAAAGGGGAATAACTTCCCCGTGAAACGAGCACTGCCGTCACAATTTTGGAATGAAACGGTGTCTTCTTCTCCAGGGAGGCGATTCCATTGTGATCTTAATAACACTGGAAGCAGCTGCACTGCTGATGAGGAAAACAATTCCTTTGCTTCTCTGTTTAGCCAGTTTCCACAGAGCTCAGCGTTTCTTGGCCCTGTTGGTGATGGTGGGTTTAGGCAACAGTTTCAACTTCCAAACATCAATTGGAACGTTTAA 1038 0.4326 MMYSMDSSSSQHPNLPPGFRFHPTDEELVVHYLKRKADSAPLPVAIIADVDLYKFDPWELPSKAAFGEREWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIIASDGNHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLPENSLNSSSLAAAPAHGRKKNSLRLDDWVLCRIYIKNNSTSFPRLPLMEQDKEVSDSMLPTMSMAKDENCKPTSSSKSASYGPMGLENDHDNFFLGILAAEQSMQNGSNSDSHQVISSDTKGNNFPVKRALPSQFWNETVSSSPGRRFHCDLNNTGSSCTADEENNSFASLFSQFPQSSAFLGPVGDGGFRQQFQLPNINWNV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3101 345 Gene3D NAC domain 24 183 IPR036093 GO:0003677|GO:0006355
Lja6g3101 345 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Lja6g3101 345 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Lja6g3101 345 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 324 - -
Lja6g3101 345 PANTHER NAC TRANSCRIPTION FACTOR 56 2 324 - -
Lja6g3101 345 SUPERFAMILY NAC domain 4 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3101 Lja-Chr6 59695913 59697572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3101 12 344 NAC Transcription Factor Family AT1G61110 51.734 1.34e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja6g3101 NAM 8.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3868 4 71312444 71315185 Lja6g3101 6 59695913 59697572 PCT