Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3086 ATGTCGCATCGGCAAACTCAACTTCACCACCGTCCTTCCTCAGTCCGCCGCGGTCGTGCACGTGAACCGCCGCTCCCTCCTCCTTCCATAAGCCGTCGGCGTGGCGGTTTCCGACCACCGAGGCTCCCTTCACATCCTATTTTTCATTCTTCATCAGACCGTGGCCAGGCACCTCCGCCGTCTTCTCCTCCTCCGTCAGCCCCCGAGCGTGGTCATGCATCTTCCTCGCCTTCTCCACCTGTTTCTACCGAGTCATTGCCGTCCGCGCCAACTCAGATGGACCTCTCTCTCAACACAGATGTCCCAGTTTCTATCATAGACTATATTTCTCAACAATGTGGGATAGATTGTTCACTTTCTGTGTCAGATGAAGATCGTGTTAAGGTAAACAAAACACTGACTGGCTTGGAATTTGAAGTTTCCATCCAAGGTCACCCTGAAATACGGTATACCATTGGTGGTGTTTCAATAAGAGAAGTGAACAAATTAATGTTCACACTTCTTGATAAAACATTATCTGTTTGTGAATACTGGGAAGGAAAATACAAGGTTAAATTGGAATACAAACACTTACCTGCTATTCGAGTGGGAAGTGAAAAAAAGCCCACGTATTTCCCAATGGAGTTTTGTAAAATTGTTAGGGAAGCCATTAAGACCCCTTGCGATAGGGAGGGAGATATAAAAAAGATTGTCAAAAGGAGGAAGAAGTTCAAGGATTATAAACTTGTACAACATTCCAACATGCAAGTAGATGAGGATCCTACCGCAATTGAGGCCCGTGTTTTGCCATCCCCAAAGCTGAAATCTCACGATCCAGACACAAAAGCAAGAGATACACCACCGATGGGTCAGTTGAATCTAAGTAAAATGAAAATGGAAAATGGTGGTAATCTGACACGATGGGGCTGTCTCAATTTTTCAAAATTGGGAACAGACTGTGTAGCTGGTTTTTGTGCAAAATTGGGTGACATCTGCACGGCCATGGGAATGGTTTTCAACTCAACCCCTGTAATTCCTATGAAGTCGGCAGAATCTGCAAAGTTAAGAAAAGAGATTGACGAGATACACAAGCAAGAAGGAAGATTACAATTGCTTTTGATAATTTTACCAGAGGTCAAGAATATATATATGGTTGTGGCATCAATGGACTGGCCTTCGGTTGCAAGTTATAAATGTGCCATGGCTCTCCAGAATCATGGACAAGAAATCCTTACTGATCATAGCATGTACAGCGAATTGATCCAAGCTTTTCGTGAAACAAATAGTCAGCTACCTAAGAGGATAATATTTTTCAGAGATGGAGTTGCTGGCACCCAGTTTTGTGACGTTTTGCAGCATGAGGTGCCAAATATAAGAAAGGGAACTAAGAGCTGGCCTATGCGCTATACTGTGCTGTTAGATGAAAATAATTTCACCTCAGACGAAATACAACAATTAGTTTATGGATTATGTCACACGTATGCAAGGTGTCCTGAATCAGTTTCAGTAGTTCCTCCGGTGTATTATGCACACCATGCAGCTTATAGAGCTCGGAAGTATGCTGATGGAGGGCTGAGCTTGCCGAAAGTTAAGGAAAACATAAAAAAATTCATGTTCTATGTCTAA 1605 0.4336 MSHRQTQLHHRPSSVRRGRAREPPLPPPSISRRRGGFRPPRLPSHPIFHSSSDRGQAPPPSSPPPSAPERGHASSSPSPPVSTESLPSAPTQMDLSLNTDVPVSIIDYISQQCGIDCSLSVSDEDRVKVNKTLTGLEFEVSIQGHPEIRYTIGGVSIREVNKLMFTLLDKTLSVCEYWEGKYKVKLEYKHLPAIRVGSEKKPTYFPMEFCKIVREAIKTPCDREGDIKKIVKRRKKFKDYKLVQHSNMQVDEDPTAIEARVLPSPKLKSHDPDTKARDTPPMGQLNLSKMKMENGGNLTRWGCLNFSKLGTDCVAGFCAKLGDICTAMGMVFNSTPVIPMKSAESAKLRKEIDEIHKQEGRLQLLLIILPEVKNIYMVVASMDWPSVASYKCAMALQNHGQEILTDHSMYSELIQAFRETNSQLPKRIIFFRDGVAGTQFCDVLQHEVPNIRKGTKSWPMRYTVLLDENNFTSDEIQQLVYGLCHTYARCPESVSVVPPVYYAHHAAYRARKYADGGLSLPKVKENIKKFMFYV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3086 534 ProSiteProfiles Piwi domain profile. 459 515 IPR003165 GO:0003676
Lja6g3086 534 MobiDBLite consensus disorder prediction 265 286 - -
Lja6g3086 534 MobiDBLite consensus disorder prediction 1 94 - -
Lja6g3086 534 MobiDBLite consensus disorder prediction 68 94 - -
Lja6g3086 534 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 459 513 - -
Lja6g3086 534 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 375 457 - -
Lja6g3086 534 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 89 375 - -
Lja6g3086 534 ProSiteProfiles Piwi domain profile. 352 457 IPR003165 GO:0003676
Lja6g3086 534 MobiDBLite consensus disorder prediction 1 16 - -
Lja6g3086 534 Gene3D - 352 457 IPR036397 GO:0003676
Lja6g3086 534 Gene3D paz domain 103 215 - -
Lja6g3086 534 Pfam Piwi domain 457 513 IPR003165 GO:0003676
Lja6g3086 534 Pfam Piwi domain 371 456 IPR003165 GO:0003676
Lja6g3086 534 Gene3D - 458 534 IPR036397 GO:0003676
Lja6g3086 534 SUPERFAMILY PAZ domain 102 233 IPR036085 GO:0005515
Lja6g3086 534 SMART Piwi_a_2 328 515 IPR003165 GO:0003676
Lja6g3086 534 CDD PAZ_argonaute_like 102 213 - -
Lja6g3086 534 ProSiteProfiles PAZ domain profile. 103 214 IPR003100 GO:0005515
Lja6g3086 534 SUPERFAMILY Ribonuclease H-like 258 533 IPR012337 -
Lja6g3086 534 Pfam PAZ domain 128 214 IPR003100 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3086 453 533 Eukaryotic Initiation Factors Gene Family AT5G43810 49.038 7.39e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3086 K11593 - zju:107410577 206.838