Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3084 ATGGTTTGTGCCTGCTTTGGAGCCTCATCTACAAAGAAGGAAATACGTCCTTCTTATATTTCCAGTGAAATTGATGGATATCCTCTAGCTGATGTTAGGCCTTTTTCTGATAAAGAATTGAGATTGGCAACCGATAATTATCATTTGAGCAATAAGATAGGACGGGGAGGTTTTGGTACTGTTTACAAGGGAACTTTGAAAGATGGAAGAAGGGTAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAGGGAGTTCGTGAATTTTTGACTGAGATTAAAACTTTGTCAACTGTTAAACATCCAAACCTCGTTAAATTGATTGGATTCTGCATTCAAGCACCTAATCGCGCACTAGTCTACCAGTATATGGAAAATGGCAGCATTTATAGTGCATTACTTGGCACAAAGAAGACAAATATCAAACTAGACTGGCAAAAAAGATCTGCTATTTGCCTTGATACTGCTAAGGGTCTTGCTTATCTCCATGAAGAGCTTGTGCCGCATATTGTGCACAGAGACATCAAAGCGAGTAATGTACTACTCGACAGAGACTTTAAACCGAAAATAGGTGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATTGCTGGAACAAGTGGTTACTTAGCACCAGAATATGCATTAGGTGGCCAGTTAACTAAAAAGGCTGATGTATTTAGCTTTGGGGTTCTTATTCTTGAAATAATCAGTGGCACAAGCAGCGCGAGGACAAACAGGACAGGGTCACATAAACTCTTCTTGGAATGGGCCTGGGAACTTTATGAAGAGGGTAAGTTGTTAGAGCTAGTAGATCCAGACATGAAAGAATATCCTGAGAAAGAGGTGACTAGGTACATGAAGGTTGCACTTTTCTGCACTCAATCAGCAGCAAGCAGAAGGCCATTGATGACTCAGGTGGTTGATATGCTCTCCAAGGAAATCCAGCTCAATGAGAAAGAGCTTACAGCACCAGGATTCTTCATGGATGCAATACAATTTTCTCAAAAGAAATCATACCCTGACTCTTCAATTAGTCAGATAAGAGATGGACATGTTAGCATTACTATGGTGAACCCACGGTGA 1104 0.4058 MVCACFGASSTKKEIRPSYISSEIDGYPLADVRPFSDKELRLATDNYHLSNKIGRGGFGTVYKGTLKDGRRVAVKTLSVGSKQGVREFLTEIKTLSTVKHPNLVKLIGFCIQAPNRALVYQYMENGSIYSALLGTKKTNIKLDWQKRSAICLDTAKGLAYLHEELVPHIVHRDIKASNVLLDRDFKPKIGDFGLAKLFPDDITHISTRIAGTSGYLAPEYALGGQLTKKADVFSFGVLILEIISGTSSARTNRTGSHKLFLEWAWELYEEGKLLELVDPDMKEYPEKEVTRYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNEKELTAPGFFMDAIQFSQKKSYPDSSISQIRDGHVSITMVNPR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3084 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 351 - -
Lja6g3084 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lja6g3084 367 Pfam Protein tyrosine and serine/threonine kinase 48 317 IPR001245 GO:0004672|GO:0006468
Lja6g3084 367 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Lja6g3084 367 PANTHER - 1 351 - -
Lja6g3084 367 CDD STKc_IRAK 53 319 - -
Lja6g3084 367 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Lja6g3084 367 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3084 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3084 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lja6g3084 367 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3084 Lja-Chr6 59550740 59554374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3084 31 366 Receptor kinase-like Gene Family AT1G56120 49.704 8.25e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g3084 PK_Tyr_Ser-Thr 9.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3084 - - gmx:100809588 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3850 4 71102848 71107857 Lja6g3084 6 59550740 59554374 PCT