Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3080 ATGTCTGACGTCGAAAATCATACCTTCCATCGTGGTTCTTCAAAATCTTCCCCCGATAAGTCAAATTCTCATGGATCTGGTCGTGAGAGTACGAGGATGAGGAAGCAAGATGGGGAGAGGAGAGATTTTCATGACCGCCATCACAGAGACTACAAGGATGGAGGGTTCAATGGAAGGGACAGATATAACAGTTATAATCGTCACCGCAGCCGTGATTATGATAGGCATAATGACCGTGTTAAAGATGGTGAGAGAAGGCACAAATATGAAGCACATTCTAAGAGATCCCGGGGAGAATCTAGATCACCATCCAGATCGCCTTCTCGTTCAGAAAGCAAAAGGATCTCTGGCTTTGACATGGCACCTCCTTCTGCAGATGGCACATCTGCTGTTTCAGGTCAAACACTGGGTATTAATCATTTAAATCAAGGAACTGCACAAAACTTCTCACTGTTTGGGATATCGCAGCCCCAGATAGGAGCACTTTCCTTAATGCAAGTTCAGCCTATGACACAGCAGGCTACAAGGCACGCACGGAGAGTGTACATTGGTGGGCTTCCTCCTTTGACTAATGAGCAGTCAATTGCAACATTCTTCAGCCATGTCATGACTGCTATTGGGGGAAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCATTTCTGGAAATGAGGACTGTTGAAGAAGCTAGTAATGCAATGTCATTAGATGGGATAGTATTTGAGGGTGTTTCTGTGAGGGTTCGTAGGCCTACAGACTATAACCCTACATTAGCTGCAGCTCTAGGTCCTTGCCAGCCAAGTCCATACCTTAACTTATCTGCCGTTGGATTGTCTGGAGGTACAATTGGTGGAACTGACGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTGCTGAAGAACAAATTAGAGAATTGCTCCAAGCTTTTGGCCCTCTCCGGTCTTTTGATCTAGTTAGGGATAAAGAAACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCGGTAACAGACATGGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGCGACAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAAACAGAGCAGGAACACATCTTTGCACAGGCTCAACAGAATATAACTATGCAGAAAGTAGCTTTAGAAGTGGTCGGGTTAAATATCCCAGGAGTTGAAAGAGTGCCAACAACAATTGATGAAAGCGCCACCAAAGTTTTATGTTTGACTGAGGCCATTACAACTGATGAATTGATGGATAATGAGGAGTATGAAGAAATAGTGGAGGACATGCGGGATGAATGCGGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCCAGTGGAGAGCAAACTCCCGGCATTGGAAAGGTTTTCTTGGAATACTCTGATACAGCTGCTTCTTTCGCGGCCAAAAGTGCGCTGAATGGTAGAAAATTTGGTGGCAATATGGTGACTGCTTATTATTATCCAGAAGAAAAGTTTCATAATATGGAGTTTGATTTATAA 1584 0.4381 MSDVENHTFHRGSSKSSPDKSNSHGSGRESTRMRKQDGERRDFHDRHHRDYKDGGFNGRDRYNSYNRHRSRDYDRHNDRVKDGERRHKYEAHSKRSRGESRSPSRSPSRSESKRISGFDMAPPSADGTSAVSGQTLGINHLNQGTAQNFSLFGISQPQIGALSLMQVQPMTQQATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVGLSGGTIGGTDGLDRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPEEKFHNMEFDL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3080 527 MobiDBLite consensus disorder prediction 1 131 - -
Lja6g3080 527 MobiDBLite consensus disorder prediction 25 108 - -
Lja6g3080 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Lja6g3080 527 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 19 525 IPR006529 GO:0003723|GO:0005634|GO:0006397
Lja6g3080 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 262 IPR000504 GO:0003723
Lja6g3080 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Lja6g3080 527 CDD RRM3_U2AF65 425 512 - -
Lja6g3080 527 PANTHER RNA-BINDING PROTEIN 2 526 - -
Lja6g3080 527 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 2 526 - -
Lja6g3080 527 Gene3D - 294 395 IPR012677 -
Lja6g3080 527 Gene3D - 174 272 IPR012677 -
Lja6g3080 527 CDD RRM1_U2AF65 178 260 - -
Lja6g3080 527 SUPERFAMILY RNA-binding domain, RBD 300 518 IPR035979 GO:0003676
Lja6g3080 527 Gene3D - 421 526 IPR012677 -
Lja6g3080 527 SUPERFAMILY RNA-binding domain, RBD 73 259 IPR035979 GO:0003676
Lja6g3080 527 SMART rrm1_1 180 258 IPR000504 GO:0003723
Lja6g3080 527 SMART rrm1_1 300 373 IPR000504 GO:0003723
Lja6g3080 527 SMART rrm1_1 427 513 IPR000504 GO:0003723
Lja6g3080 527 CDD RRM2_U2AF65 299 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3080 Lja-Chr6 59510311 59525273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3080 301 506 Eukaryotic Initiation Factors Gene Family AT1G22760 26.214 3.67e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3080 K12837 - vvi:100243034 647.121