Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3066 ATGGCTGCAAGTTTTGCTTCCAGATGTTCTCGTGTGGGTCGTTCTCTGTTCAGTGGTTTAAGCAACAGTCACCTTGGTTCACATGAGATGACACACAGTAATTACTTTTCTCAGCAGCAACGCACCTTCATACAAATGAGGACTGTTCTCAAGGTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATCCAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACTATAGTAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAGGTGGTATATGGGGTTGTTGTGCGTGCAGCAATGCAGAAGGGGAGATGTGATGGCGGCGAGGTCAGGTTTGATGACAATGCTGTTGTTCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGACCGGTACCTCATGAGCTTAGGCGGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAA 489 0.4642 MAASFASRCSRVGRSLFSGLSNSHLGSHEMTHSNYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGGEVRFDDNAVVLVDKQGQPIGTRVFGPVPHELRRKKHVKILTLAGHIA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3066 162 Pfam Ribosomal protein L14p/L23e 44 161 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g3066 162 ProSitePatterns Ribosomal protein L14 signature. 100 126 IPR019972 -
Lja6g3066 162 SMART Ribosomal_L14_2 43 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g3066 162 TIGRFAM rplN_bact: ribosomal protein uL14 44 161 IPR005745 GO:0003735|GO:0006412|GO:0015934
Lja6g3066 162 Hamap 50S ribosomal protein L14 [rplN]. 43 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g3066 162 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 21 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g3066 162 SUPERFAMILY Ribosomal protein L14 44 161 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lja6g3066 162 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 21 162 - -
Lja6g3066 162 Gene3D Ribosomal protein L14 43 162 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3066 Lja-Chr6 59431695 59433390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3066 54 145 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.364 7.48e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3066 K02874 - gmx:100818301 272.707