Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3062 ATGGCATTTCAGCACTACTTTTCCCAGGAATTGAAAACCACCCCAAATTCTGTGACAGAAACAGAAAGTTCCAATGGTTGTTTCGATTGCAACATCTGCTTAGACATCGCACACGAACCGGTAGTCACCCTCTGTGGTCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTACATGTCCAAAGTGATTCTCTCGCACCTGATGAGCATCCACAATGCCCTGTTTGTAAGGTTGACATATCCCACAGCACAATGGTCCCGCTGTACGGCCGAGGGCACGCCCCACGTGGTGGGAAAGCATCATGTTGTGATCTATTTACACCACCAAGACCACCTGCTTCAGGTGCTCAAGCTCTTTTGGGAACATCATCATCATCTCAAAATTCTCAGCAGCAGCAGCAGCTTCAATATCGTAATCCTTATCAAGGTCAATATTTCAGCTCTCCTTTATACCAAGAAGAAGATGATGATGCCACTTCACAAATGTTCAATCTTGGTGCTTCAACCATGACAACTCCAGGATCCCACCCCCACCCTGTAGTAGGGATGTTTGGGGAGATGGTTTTCGCTCGAGTGTTTGGCAACTCGGAAAATTTGTACGCCAACCCGAATTCTCATCAGTTGATGAGAAGTAATGGCTCTAGAATGAGAAGGCAAGAGATGCAGGCAGACAAATTTTTGAACAGAATTTCAATTTTTCTCTTGTGCTGCTTTTTTCTGTGCCTTATCTTTTTCTAA 738 0.4539 MAFQHYFSQELKTTPNSVTETESSNGCFDCNICLDIAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKVDISHSTMVPLYGRGHAPRGGKASCCDLFTPPRPPASGAQALLGTSSSSQNSQQQQQLQYRNPYQGQYFSSPLYQEEDDDATSQMFNLGASTMTTPGSHPHPVVGMFGEMVFARVFGNSENLYANPNSHQLMRSNGSRMRRQEMQADKFLNRISIFLLCCFFLCLIFF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3062 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 245 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja6g3062 245 CDD RING-HC_AtRMA_like 28 77 - -
Lja6g3062 245 SMART ring_2 30 76 IPR001841 -
Lja6g3062 245 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lja6g3062 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 90 IPR013083 -
Lja6g3062 245 MobiDBLite consensus disorder prediction 114 134 - -
Lja6g3062 245 MobiDBLite consensus disorder prediction 117 134 - -
Lja6g3062 245 SUPERFAMILY RING/U-box 26 89 - -
Lja6g3062 245 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Lja6g3062 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 245 - -
Lja6g3062 245 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3062 Lja-Chr6 59401099 59403245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3062 10 231 C3H Transcription Factor Family AT4G27470 42.731 1.37e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3062 K10666 - gmx:100816864 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3837 4 70959534 70960623 Lja6g3062 6 59401099 59403245 PCT