Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3054 ATGACCACAAACAATCACATGCAACCGCTTCCACCGTTTCTCCTCTCTTTCTTCCTCCTCTTCAGCTCAATATCCGCCATTGAATTCATCTTCAACGGCTTCAACAACGCTTCTGATGTCTTACTCTTCGGCAATGCCACCGTTGATTCTCGTATTCTCACCCTCACACACCATCAAAGATTTTCCATTGGCCGTGCTCTGTTCCCTGCAAAAATCGCCACCAAAAAACCAAACTCTTCTTATGTCTACCCTTTCTCCACTTCCTTCATCTTCACCATGGCGCCATTTGCAAACACACTTCCCGGGCATGGCTTAGTTTTCATCTTCACTCCGGTTACTGGAATCCAAGGTACCAGCTCAGCTCAGCATCTGGGTTTGTTTAACCTCAGCAACAATGGTAGTCCCAGCAACCATGTGTTTGGTGTTGAGTTCGATGTGTTCATGAACCAGGAGTTCAATGATTTGAATGCTAACCATGTTGGGGTTGACATGAATTCTCTCAAGTCTGTTTTCTCCCATGATGCTGGGTATTGGCCAGAGGATAGGAAAAGTGAAGATGATAAGTCTTTTAAGGAGTTGATGCTCAACAATGGTGAAAACTACCAGGTTTGGATTGATTATGAAGATTCTATGCTTAATGTTACCATGGCAAAGGTTGGTGTGAAAAGGCCTAGCAGGCCATTGATGAATGTTTCTCTGAACTTGTCTGAAGTTTTTGTAGATGAGATGTTTGTTGGATTTACTAGTGCAACTGGGCAGTTGGTTGAAAGTCACAAGATTCTGGCTTGGAGTTTTAGCAATACAAATTTTTCGTTGAGTGAAGAACTTGTTACTACTGGGTTACCTTCTTTTGTTCTTCCACAGACTTCAATTGTTCAGTCTAAGGGGTTTGCTGCAGGAGTTACCATTGGAGTTTGCTTTTTTGTTTGTCTACTGGTTTTGTTGGCACTGTTTTTGATTCAGAGGAGGCGAAGGATGATAAGGAAGAGAAATGAAATGGAAGATTGGGAATTGGAGTATTGGCCACACAGAATGACATATGAAGAAATAGAAGCAGCCACAAAGATGTTCTCTGAGGAAAACGTGATTGGAGTTGGAGGGAATGGGAAGGTGTACAAGGGTGTTTTAGGAGGAGGGGAAGAGGTAGCTGTGAAACGCATTTCTCATGAAAACGATGGCGTTCGAGAATTTCTTGCAGAAATTTCGAGCCTTGGGAGATTGAAGCAAAGGAATTTGGTGGGGTTGAGAGGCTGGTGCAAGAAAGACATGGGGAATTTCTTGTTAGTTTATGAATACATGGAAAATGGAAGCTTAGACAAGAGGGTGTTTGATTGTGATGAAAGCAAGATGTTAGGTCTTGAAGACAGGACAAGGATTATTAAAGATGTGGCTTCTGCTATCATGTACTTGCATGAGGGTTGGGAAGTCAAAGTAGTGCATAGGGACATCAAGGCCAGCAATGTCTTATTGGATAGGGATATGAATGGAAGGTTGGGGGATTTCGGGTTAGCGCGAATGCACAACCATGATCATGTTGCTAGCACAACAAAATTGGTTGGGACAGTGGGGTACATGGCTCCTGAAGTGATCAAAACCGGACGAGCTTCAACTCGTACTGATGTTTACATGTTTGGCATCTTGGTTCTAGAAGTCATGTGTGGAAGGAGGCCTCTAGAAGAAGGTAAGCCACCTTTGGTGGAGTGGGTATGGAAGCAAATGGTAGAAGGGGAACTTGTGAATGCAATTGATGAAACGCTAAGGGCTAAAGAAGAGTTCAGTGTACAAGAAATGGAGAGGGTGCTGCACTTGGGTTTGTTGTGTGCATACCCTGAACCAAAAGCCAGGCCAACAATGAGGCAAGTGTTGAATATTTTAGAGGGGAAGAATGAGGGAGAGGACTCAGAAATTGAGAATATGGACACCTATTTGCTCAACCAGTTGAATTCAAGGGATCTAATTTCCGAGTATTCCCAGTATTTTTGCTTTTCAACACACCCAACTCTTGAGGATATTAATTTATCTTCCTCAATGTCCTCTTGGTCCAAATCTTCAATTGGTGGCAGGTGA 2067 0.4315 MTTNNHMQPLPPFLLSFFLLFSSISAIEFIFNGFNNASDVLLFGNATVDSRILTLTHHQRFSIGRALFPAKIATKKPNSSYVYPFSTSFIFTMAPFANTLPGHGLVFIFTPVTGIQGTSSAQHLGLFNLSNNGSPSNHVFGVEFDVFMNQEFNDLNANHVGVDMNSLKSVFSHDAGYWPEDRKSEDDKSFKELMLNNGENYQVWIDYEDSMLNVTMAKVGVKRPSRPLMNVSLNLSEVFVDEMFVGFTSATGQLVESHKILAWSFSNTNFSLSEELVTTGLPSFVLPQTSIVQSKGFAAGVTIGVCFFVCLLVLLALFLIQRRRRMIRKRNEMEDWELEYWPHRMTYEEIEAATKMFSEENVIGVGGNGKVYKGVLGGGEEVAVKRISHENDGVREFLAEISSLGRLKQRNLVGLRGWCKKDMGNFLLVYEYMENGSLDKRVFDCDESKMLGLEDRTRIIKDVASAIMYLHEGWEVKVVHRDIKASNVLLDRDMNGRLGDFGLARMHNHDHVASTTKLVGTVGYMAPEVIKTGRASTRTDVYMFGILVLEVMCGRRPLEEGKPPLVEWVWKQMVEGELVNAIDETLRAKEEFSVQEMERVLHLGLLCAYPEPKARPTMRQVLNILEGKNEGEDSEIENMDTYLLNQLNSRDLISEYSQYFCFSTHPTLEDINLSSSMSSWSKSSIGGR* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3054 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 271 IPR013320 -
Lja6g3054 688 Gene3D Phosphorylase Kinase; domain 1 320 432 - -
Lja6g3054 688 ProSiteProfiles Protein kinase domain profile. 357 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3054 688 SUPERFAMILY Protein kinase-like (PK-like) 332 626 IPR011009 -
Lja6g3054 688 CDD lectin_legume_LecRK_Arcelin_ConA 27 268 IPR001220 GO:0030246
Lja6g3054 688 Pfam Legume lectin domain 27 270 IPR001220 GO:0030246
Lja6g3054 688 PANTHER - 14 678 - -
Lja6g3054 688 Pfam Protein kinase domain 358 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3054 688 SMART serkin_6 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3054 688 Gene3D Transferase(Phosphotransferase) domain 1 433 642 - -
Lja6g3054 688 Gene3D - 25 276 - -
Lja6g3054 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Lja6g3054 688 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 14 678 - -
Lja6g3054 688 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Lja6g3054 688 CDD STKc_IRAK 363 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3054 Lja-Chr6 59317407 59319812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3054 24 573 Receptor kinase-like Gene Family AT4G04960 67.387 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja6g3054 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3054 - - lja:Lj6g3v2019790.1 1277.31