Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3049 ATGGATAACAACCCTAGTTCATCCAGAGTTGATAGAAAAGTCATTGAGAGGAATAGAAGAAATCAAATGAGAACACTCTACCGCAAGCTCAACTCACTGGTGCTTCATCAAACCTCAAAGGAGGCAATTTCACTACCAGATCAGCTAGAGGAAGCCACAAACTACATAAAAAGATTACAGGTGAACCTAGAGAAAATGAAGGAAAAGAAGAACACCCTGTTGGGAATTGAGAGGCCTAATGTGATGAGTTTGAAAGAAGGCCCGAGCATGGGGTTAAAATCTCCAAAAATTGAGATACAACAAATGGGTTCAGCCTTAGATGTTGTTCTGATAACTGGGTCGGATTGTCAGTTCATGTTCAATGAGACAATTCGCGTTCTTCATGAAGAAGGAGTAGATGTTGTTAATGCAAGTTATAAAGTCATTGAAGGTTCTGCTTTCCATTCAATACACTGCCTGGTGACAGGATCTGCCAATGTTGCTGAGAGGATTTCTGAACGACTAAACAAGTTTATATATGGTTCTAGCTATATTACCTTTTGA 543 0.3959 MDNNPSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGSDCQFMFNETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGSANVAERISERLNKFIYGSSYITF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3049 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Lja6g3049 180 Gene3D - 2 84 IPR036638 GO:0046983
Lja6g3049 180 PANTHER TRANSCRIPTION FACTOR BHLH162 1 173 - -
Lja6g3049 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 173 IPR015660 GO:0003700|GO:0006357
Lja6g3049 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Lja6g3049 180 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Lja6g3049 180 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3049 Lja-Chr6 59281676 59283613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3049 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.333 5.27e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g3049 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3049 - - gmx:100814407 275.018