Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3042 ATGTTCAATTGGTTTCAATTGTATTTGCATGATTACATGATCAAAAGGGGAATGCGTAACACCGCTGAGATTTTCAGAAACGAAGCCCAATTTCAAATCCAACCTCTTGTGCTTGATTCTCCAGATGGGTTCCTCTATGATTGGTGGTCTATTTTCTATGAGGTGTTTGCCTCAAGGTATGGGAGGGGACACTGCACTGGGCCAGAGTCCTCTTGTAAGGTTCCAATGAATATGATGCCAGCTGGTAATTCAAACAATGCTAGCCCTCATAGAATCCCTCAAATACCAATGAATGAACACAGACCTCAACAATTTCAAGCCAATTCCGGATTTAACAACATGATACCACAACCTGCAGCTCGTTTAATACCTCAAGCAGTGTTTGATAATGGACAACTTGGAAATCTGGCCGAAAATGTTGAACCAAGTTTGCATGATCTTCTCAGAGAAAATAACCAGAAGCTTCTGTCAGGAACTAATTCGAATCATCTACCGCATCCGCAAGATGTAGGCAAGCAGGTCCAGAAGTACGTCTTCAAGGGTAGTGGTGTTACTATGCGTGTTGGGAGGGATGTACCTAGGGACCCTCCGGATGTTGTGCAAAAAACTATGCTTCCTTTAGATGGACCTCATCAAACAAACAACAATGAAGCTCTCAATCTAGTACCACAGCCACTAAATGGAGGGCCAGTAAATGTAGGTGATGGAACACCAAACTCTCACCAGCAGTGTCAAGTGTTGAAAACACAAAATCAGGATGCTGCTCTGACTCAAGCACCTGCATGTACTCCTAATAGACAAACTTCCACAGTTCCTGGTACCAAACGTAAGAATAAACATCCAAAGATTCCCAAGACTGGATCAAGTAAAAATGATAGCCAGAAGATGGAACAAATTATTAGTACTGGAGAACATCAATGCAATCAGGATCAGCAGATACAGATGCAGTCCCAGAATGTTGAGAAGAGCACAAAGAGAATGATAACAGAATCCACAAGACCTGTAGAAAGTGCCCAGGACTGTGCGGATGCAAAACCAGCAGATGAAAATGTAGAGTCTTTCCTGTCTTTCGAAGACGAACCTGCTGATAATAGAATTGAGCCTTTCAGCAATCTGAAACGTATTTCAGCTACATGCAGTAGAAATGAAAATAAGGGTTTTTCACTCCAAGAGATTGGTTGCCTTCACAAGAGCATAAACAAGGTTTTGACCTGCCATTTTTCATCTGATGGTAAAGTTATGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAAATTTTCAATATTTTGCATCTGCAGATACACACTCACATCTCATTACAGATGTTCGGTTTCAACCAGGTTCAACTATGTTTGCAACATCTTCCTTTGATAGATCTGTAAGACTATGGGATGCTAGCAATCCTATAAGATCCTTGGGCATACTCACTGGGCATGACGAACAAGTAATGTCATTGGACTTCCATCCGAGAAGGATGGACCTTCTTTGCTCGAGCGATAGCAATGATGTAATTCGCCTGTGGAATGTTAATCAAAGTGAATGCATGCATACCACTCGGGGAGGAAGTAAACAAGTCAGATTCCAGCCTCAGTATGGGCAGCTTCTGGCTACTGCTATTGGAAATTCTATCACAATAATTGATGTTGAGACTGATAGCCACCTACATGATCTAAAGGGACATGATAAAGATGTTCTTTCCATCTGTTGGGATAGAAGTGGAAACTTCCTTGCCTCCGTTAGTGAAGACAGTGCACGTATCTGGTCTGCTGCATCAGACGGAAAATGCATTGGTGAGTTGCATTCAGTTGGGAACAAGTTTCAGTCGTGCATATTCCATCCGGGATATCGTAGCCTCTTAATTATCGGTGGCTATCAGTCCCTGGAAGCATGGTCTCCGACAGAGGGCAGTAAAACATGGTCCATTGCTGCACACCAGGGGTTGATTGCAGGACTGGCAGATTCCCCTGTAGGTGAATTGATAGCCTCAGCTAGCCATGATAACAGCGTGAAAGTATGGAAATGA 2037 0.4286 MFNWFQLYLHDYMIKRGMRNTAEIFRNEAQFQIQPLVLDSPDGFLYDWWSIFYEVFASRYGRGHCTGPESSCKVPMNMMPAGNSNNASPHRIPQIPMNEHRPQQFQANSGFNNMIPQPAARLIPQAVFDNGQLGNLAENVEPSLHDLLRENNQKLLSGTNSNHLPHPQDVGKQVQKYVFKGSGVTMRVGRDVPRDPPDVVQKTMLPLDGPHQTNNNEALNLVPQPLNGGPVNVGDGTPNSHQQCQVLKTQNQDAALTQAPACTPNRQTSTVPGTKRKNKHPKIPKTGSSKNDSQKMEQIISTGEHQCNQDQQIQMQSQNVEKSTKRMITESTRPVESAQDCADAKPADENVESFLSFEDEPADNRIEPFSNLKRISATCSRNENKGFSLQEIGCLHKSINKVLTCHFSSDGKVMASAGHEKKVFIWNMENFQYFASADTHSHLITDVRFQPGSTMFATSSFDRSVRLWDASNPIRSLGILTGHDEQVMSLDFHPRRMDLLCSSDSNDVIRLWNVNQSECMHTTRGGSKQVRFQPQYGQLLATAIGNSITIIDVETDSHLHDLKGHDKDVLSICWDRSGNFLASVSEDSARIWSAASDGKCIGELHSVGNKFQSCIFHPGYRSLLIIGGYQSLEAWSPTEGSKTWSIAAHQGLIAGLADSPVGELIASASHDNSVKVWK* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 678 IPR001680 GO:0005515
Lja6g3042 678 MobiDBLite consensus disorder prediction 287 336 - -
Lja6g3042 678 SMART WD40_4 430 469 IPR001680 GO:0005515
Lja6g3042 678 SMART WD40_4 388 427 IPR001680 GO:0005515
Lja6g3042 678 SMART WD40_4 597 636 IPR001680 GO:0005515
Lja6g3042 678 SMART WD40_4 516 552 IPR001680 GO:0005515
Lja6g3042 678 SMART WD40_4 639 678 IPR001680 GO:0005515
Lja6g3042 678 SMART WD40_4 473 513 IPR001680 GO:0005515
Lja6g3042 678 SMART WD40_4 555 593 IPR001680 GO:0005515
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Lja6g3042 678 CDD WD40 400 678 - -
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 472 - -
Lja6g3042 678 Gene3D - 277 530 IPR015943 GO:0005515
Lja6g3042 678 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 678 IPR044716 GO:0003714
Lja6g3042 678 MobiDBLite consensus disorder prediction 262 344 - -
Lja6g3042 678 Pfam WD domain, G-beta repeat 476 513 IPR001680 GO:0005515
Lja6g3042 678 Pfam WD domain, G-beta repeat 439 469 IPR001680 GO:0005515
Lja6g3042 678 Pfam WD domain, G-beta repeat 396 427 IPR001680 GO:0005515
Lja6g3042 678 Pfam WD domain, G-beta repeat 643 678 IPR001680 GO:0005515
Lja6g3042 678 Pfam WD domain, G-beta repeat 558 593 IPR001680 GO:0005515
Lja6g3042 678 ProSitePatterns Trp-Asp (WD) repeats signature. 500 514 IPR019775 -
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 472 IPR001680 GO:0005515
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats profile. 480 522 IPR001680 GO:0005515
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 480 518 - -
Lja6g3042 678 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 678 - -
Lja6g3042 678 Gene3D - 531 678 IPR015943 GO:0005515
Lja6g3042 678 SUPERFAMILY WD40 repeat-like 389 678 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3042 Lja-Chr6 59214848 59221853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3042 382 677 Miscellaneous Gene Families AT5G08390 24.756 9.15e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lja6g3042 WD40 0.0063 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3042 - - gsj:114387334 841.647