Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3041 ATGAAGTTCAACATCGCGAATCCAACCACTGGGTGCCAGAAGAAGCTCGAAATCGATGATGACCTCAAGCTTCGTGCTTTCTGGGACAAGAGGATCTCGCAAGAGGTTCTCGGTGATGCTTTGGGCGAGGAGTTCAAGGGCTATGTCTTCAAAATCACTGGAGGGTGCGACAAGCAAGGTTTTCCAATGAAGCAGGGTGTGTTGACCCCTGGCCGTGTTCGCCTCTTGCTCCACCGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTACGTGGATGCATTGTCAGCCCTGACCTCTCTGTTCTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATTTACCTGGCTTGACTGATGTTGAGAAGCCAAGGATGAGGGGTCCCAAGAGGGCTTCTAAAATCCGCAAGCTGTTCAATCTGTCTAAGGATGATGATGTGAGGAAGTATGTCAACACATACCGTAGAACATTCACAACCAAAGCTGGGAAAAAGGTGAGCAAAGCTCCTAAGATTCAGCGATTGGTCACTCCTCTGACACTTCAAAGGAAGAGGGCAAGAATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAATACCAGAAACTACTTGCCTCCAGGTTGAAGGAGCAGAGGGAACGCCGTAGCGAGAGTTTGGCTAAGAGAAGATCTAAGCTTTCCAGTGCTGCTAAGCCAGCTGCTACAGCATAG 750 0.4893 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAKPAATA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3041 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja6g3041 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lja6g3041 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja6g3041 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
Lja6g3041 249 Coils Coil 189 216 - -
Lja6g3041 249 MobiDBLite consensus disorder prediction 219 237 - -
Lja6g3041 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lja6g3041 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja6g3041 249 Gene3D - 133 234 - -
Lja6g3041 249 MobiDBLite consensus disorder prediction 219 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3041 Lja-Chr6 59211189 59213641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3041 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.289 5.03e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3041 K02991 - gmx:100786559 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3817 4 70680726 70683363 Lja6g3041 6 59211189 59213641 PCT