Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3039 ATGGAGCAAGGTCAAGGAGATGGAAGAAGAGGTGAAAGGAGAGTGCTGCAACAAGGTGAGGCTCTGGCCCAAGCCCAAGCCCAAGCCCAGGCCCGGCAACCACAGAAGTGTCCTCGCTGTGACTCCATGAACACAAAGTTCTGTTACTACAACAACTACAGCTTGACACAGCCTCGTTACTTTTGCAAGACATGCAGAAGGTACTGGACCCAAGGTGGGGCCCTCAGGAACGTTCCTGTTGGCGGTGGTTCCCGTAAAGCTAAGCGCGCTAGAAACTCTTCCACCGCCGGCGCTGTTGCCGGGAATGCTTCCCGTCCCCGTCCCCTGCCTCAGCAGCCACCACAGGAGGTGGTGGTCCAAACACAGCAGCCGGTGGTGGCTAAGGAGCCTTCTGCAGCTGTAGCTCCGGTGGTGGCTCCGTTTTATCAAGGTGGTGTTGGTGGAGGTGGCGGTGGATATTTGGCTGCTCTGAACCCGTCACTCCCTTTTGATCAGTCTGTGAATGTTGGGGGTGATGCTGTGCATTCTTATGTGGGTCTTCTCTCAGGTTTTGATGTTGCTGCTCCTCCTCTTGGCTTTCAAAGCCAGAGCTACTTTCATCCGTCGCTGTTCTATCCACCTGTTACCGGAGGAAGTGGCGTGGCGGCGTCGACTCTGTTTAACTCTCAACAAGGTTTGGTTCAATCCACCATGGCTAATGTTACCTCTGCTTCTCACCATGGCTGGTCTCACCAGCCTCAGAACTTGAGCTTCATGAATAATGCAGGTAGCAGGGCTTCTTCTGATGCAGCTATGTGGAGCACTTTCACTCCCAATGTTGGTGCTGGAAACTCATCTGTTGCTGGTGGTGGTGGCGCTGGTATTGGTGGTGGTTCTTTCTCTGTTGTTCCAGATGAGTGGCCTGATGTGGTGCCAGGGTATGATGCTCCTCCTCCACCTCCTCCTTTGAACTGA 954 0.5409 MEQGQGDGRRGERRVLQQGEALAQAQAQAQARQPQKCPRCDSMNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGALRNVPVGGGSRKAKRARNSSTAGAVAGNASRPRPLPQQPPQEVVVQTQQPVVAKEPSAAVAPVVAPFYQGGVGGGGGGYLAALNPSLPFDQSVNVGGDAVHSYVGLLSGFDVAAPPLGFQSQSYFHPSLFYPPVTGGSGVAASTLFNSQQGLVQSTMANVTSASHHGWSHQPQNLSFMNNAGSRASSDAAMWSTFTPNVGAGNSSVAGGGGAGIGGGSFSVVPDEWPDVVPGYDAPPPPPPLN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3039 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 310 IPR045174 GO:0003700|GO:0006355
Lja6g3039 317 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Lja6g3039 317 MobiDBLite consensus disorder prediction 1 16 - -
Lja6g3039 317 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Lja6g3039 317 MobiDBLite consensus disorder prediction 78 114 - -
Lja6g3039 317 MobiDBLite consensus disorder prediction 1 34 - -
Lja6g3039 317 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Lja6g3039 317 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 15 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3039 Lja-Chr6 59199723 59200676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3039 7 106 C2C2-Dof Transcription Factor Family AT3G52440 53.704 3.45e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja6g3039 zf-Dof 5.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3039 6 59199723 59200676 Lja6g3039 6 59199723 59200676 ECH
Lja4g3815 4 70670565 70672553 Lja6g3039 6 59199723 59200676 PCT